Rw2G051860

Protein of unknown function (DUF3754)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
79658714 .. 79663026
4313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051860.1

Sequence Viewer

Length: 306 bp
ATGAGTGCATCATTGTCGATTTCGAGCAAATTCATCAGAGAGAGAGAGGAAGAAGAGGAGGGGGACGGGAAGCTCTCAGGGAAATCATCAGCCGGGCAGTCCAACCCGAAGCATGACTATAATGATTGGGAGCTCATATTTCCTTTAAGCTTCTTTGCGGGGACAGGTTTTCAGCAGAACTTGGCTGCATATCAGAACCTAATAACACAGTCCATGTATGACAAGCAACTGGATAGCGGAAGGGGTACTCTTCTGATTTGGGAAGTTGGAGAAATTGGGAATTGTCTCTCGGTTAAGACTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.2

Weight (kDa)

4.72

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 158, 237
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 247
AluBI AGCT 3 cut(s) 73, 133, 150
AluI AGCT 3 cut(s) 73, 133, 150
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 94
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 172
BcgI CGANNNNNNTGC 1 cut(s) 31
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 290
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 2 cut(s) 77, 175
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 77, 175
Bsp1286I GDGCHC 1 cut(s) 135
BspACI CCGC 2 cut(s) 158, 237
BspCNI CTCAG 1 cut(s) 89
BsrI ACTGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 48, 255
BstDEI CTNAG 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 113, 214
CviJI RGCY 5 cut(s) 73, 92, 133, 150, 185
CviKI_1 RGCY 5 cut(s) 73, 92, 133, 150, 185
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 48, 255
EarI CTCTTC 2 cut(s) 48, 255
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 2 cut(s) 116, 217
FaiI YATR 6 cut(s) 114, 120, 137, 190, 215, 219
FaqI GGGAC 2 cut(s) 77, 175
FatI CATG 2 cut(s) 112, 213
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 186
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
HapII CCGG 1 cut(s) 93
Hin1II CATG 2 cut(s) 116, 217
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 93
Hpy188I TCNGA 3 cut(s) 38, 195, 255
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 8, 188
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 2 cut(s) 116, 217
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 63, 106, 150, 215
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 17
MboII GAAGA 3 cut(s) 62, 65, 242
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 29, 273, 280
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 2 cut(s) 126, 247
MnlI CCTC 3 cut(s) 40, 49, 52
MseI TTAA 2 cut(s) 146, 294
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 94
NciI CCSGG 1 cut(s) 94
NlaIII CATG 2 cut(s) 116, 217
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 135
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 146, 294
SatI GCNGC 1 cut(s) 186
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 135
SetI ASST 5 cut(s) 75, 135, 152, 169, 201
SfaNI GCATC 1 cut(s) 17
Sse9I AATT 3 cut(s) 29, 273, 280
SsiI CCGC 2 cut(s) 158, 237
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 17, 23
TasI AATT 3 cut(s) 29, 273, 280
Tru1I TTAA 2 cut(s) 146, 294
Tru9I TTAA 2 cut(s) 146, 294
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 22
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.