Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Forward (+)

71703649 .. 71704320

Gene Structure 672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0596200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGATCGTTTCTGTCAAGCCTGCTCGGAGGATCGCCGGCGGAGGCCTCAGCCTCCTCATCCGAAGACTCTCGGGTGACGTCGTTTCACTCATCCGCCAGGTGGCAGCTCCACTTCAATTCCATCAAGGACACCTCCAAACTGCTGGTGATCGATTTCTCGGCGTCGTGGTGCGGGCCCTGCAGGTTCATAGAGCCGGCCATCCACGCCATGGCGGATAGGTTCACCGACGTTGACTTCGCCAAGATCGACGTCGACGAGCTCTCAGTGATGTGTCTCAGGAATTTGGGGTGCAGGCAATGCCGACCTTTGTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3754

Protein Analysis

106

Amino Acids

11.68

Weight (kDa)

5.82

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	40 - 92	1.5e-14	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	83, 255
Acc36I	ACCTGC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	4 cut(s)	41, 96, 174, 215
AclWI	GGATC	2 cut(s)	13, 40
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	283
AcyI	GRCGYC	3 cut(s)	80, 164, 252
AfiI	CCNNNNNNNGG	2 cut(s)	102, 211
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	2 cut(s)	109, 262
AluI	AGCT	2 cut(s)	109, 262
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	13, 40
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	3 cut(s)	45, 176, 198
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	2 cut(s)	176, 177
AsuHPI	GGTGA	3 cut(s)	88, 160, 217
AvaI	CYCGRG	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	180, 264
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	131, 209
BcgI	CGANNNNNNTGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	176, 177
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	153
BsaHI	GRCGYC	3 cut(s)	80, 164, 252
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 211
Bse118I	RCCGGY	2 cut(s)	37, 196
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	59, 92, 201
BseLI	CCNNNNNNNGG	2 cut(s)	102, 211
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	3 cut(s)	63, 279, 292
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	313
BshFI	GGCC	3 cut(s)	47, 178, 200
BshVI	ATCGAT	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	38, 197
BslI	CCNNNNNNNGG	2 cut(s)	102, 211
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	47, 178, 200
BsoBI	CYCGRG	1 cut(s)	72
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	180, 264
Bsp143I	GATC	4 cut(s)	5, 32, 150, 246
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	4 cut(s)	41, 96, 174, 215
BspANI	GGCC	3 cut(s)	47, 178, 200
BspCNI	CTCAG	3 cut(s)	62, 278, 291
BspDI	ATCGAT	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	13, 40
BsrDI	GCAATG	1 cut(s)	305
BsrFI	RCCGGY	2 cut(s)	37, 196
BssAI	RCCGGY	2 cut(s)	37, 196
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	5, 32, 150, 246
BssNI	GRCGYC	3 cut(s)	80, 164, 252
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	100
BstACI	GRCGYC	3 cut(s)	80, 164, 252
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstC8I	GCNNGC	5 cut(s)	23, 39, 176, 198, 296
BstDEI	CTNAG	3 cut(s)	49, 265, 278
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	59, 92, 201
BstKTI	GATC	4 cut(s)	8, 35, 153, 249
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	4 cut(s)	5, 32, 150, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 206, 300
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	47, 178, 200
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	59, 92, 201
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	5 cut(s)	23, 39, 176, 198, 296
Cfr10I	RCCGGY	2 cut(s)	37, 196
Cfr13I	GGNCC	2 cut(s)	176, 177
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	1 cut(s)	153
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	8 cut(s)	21, 47, 53, 109, 178, 196, 200, 262
CviKI_1	RGCY	8 cut(s)	21, 47, 53, 109, 178, 196, 200, 262
DdeI	CTNAG	3 cut(s)	49, 265, 278
DpnI	GATC	4 cut(s)	7, 34, 152, 248
DpnII	GATC	4 cut(s)	5, 32, 150, 246
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	3 cut(s)	56, 85, 230
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	180, 264
Eco53kI	GAGCTC	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	2 cut(s)	180, 264
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	191, 212
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	3 cut(s)	46, 79, 188
FriOI	GRGCYC	2 cut(s)	180, 264
Fsp4HI	GCNGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	47, 178, 200
HapII	CCGG	2 cut(s)	38, 197
HgaI	GACGC	1 cut(s)	153
Hin1I	GRCGYC	3 cut(s)	80, 164, 252
Hin1II	CATG	1 cut(s)	214
HincII	GTYRAC	2 cut(s)	235, 256
HindII	GTYRAC	2 cut(s)	235, 256
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	38, 197
HphI	GGTGA	3 cut(s)	88, 160, 217
Hpy166II	GTNNAC	3 cut(s)	225, 235, 256
Hpy188I	TCNGA	2 cut(s)	29, 64
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	3 cut(s)	225, 235, 256
Hpy99I	CGWCG	6 cut(s)	85, 169, 233, 254, 257, 260
HpyCH4IV	ACGT	3 cut(s)	80, 231, 252
HpyCH4V	TGCA	2 cut(s)	183, 294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 206, 300
HpyF3I	CTNAG	3 cut(s)	49, 265, 278
HpySE526I	ACGT	3 cut(s)	80, 231, 252
Hsp92I	GRCGYC	3 cut(s)	80, 164, 252
Hsp92II	CATG	1 cut(s)	214
KroI	GCCGGC	2 cut(s)	37, 196
KroNI	GCCGGC	2 cut(s)	39, 198
Kzo9I	GATC	4 cut(s)	5, 32, 150, 246
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	118
MaeII	ACGT	3 cut(s)	80, 231, 252
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	4 cut(s)	7, 34, 152, 248
MboI	GATC	4 cut(s)	5, 32, 150, 246
MboII	GAAGA	1 cut(s)	77
MhlI	GDGCHC	2 cut(s)	180, 264
MluCI	AATT	2 cut(s)	118, 283
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	6 cut(s)	23, 37, 58, 64, 67, 145
MreI	CGCCGGCG	1 cut(s)	37
MroNI	GCCGGC	2 cut(s)	37, 196
MspI	CCGG	2 cut(s)	38, 197
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	180, 206, 300
NaeI	GCCGGC	2 cut(s)	39, 198
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	4 cut(s)	5, 32, 150, 246
NgoMIV	GCCGGC	2 cut(s)	37, 196
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 255
PdiI	GCCGGC	2 cut(s)	39, 198
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	178
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	176, 177
PstI	CTGCAG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	4 cut(s)	5, 32, 150, 246
Sau96I	GGNCC	2 cut(s)	176, 177
SbfI	CCTGCAGG	1 cut(s)	185
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	100
SdaI	CCTGCAGG	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	180, 264
SfcI	CTRYAG	1 cut(s)	181
SgrAI	CRCCGGYG	1 cut(s)	37
SgrDI	CGTCGACG	1 cut(s)	254
Sse8387I	CCTGCAGG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	118, 283
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	41, 96, 174, 215
SstI	GAGCTC	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	3 cut(s)	83, 234, 255
TaqI	TCGA	3 cut(s)	153, 249, 255
TasI	AATT	2 cut(s)	118, 283
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	255
ZraI	GACGTC	2 cut(s)	81, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.