Rroxscaffold_2G00133310

Protein of unknown function (DUF3754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000718
Physical Location & Seq
Forward (+)
70428856 .. 70450457
21602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133310.1

Sequence Viewer

Length: 867 bp
ATGTTGTTCTCCACCAATGCCGAGCCCCCACACTTCTGCAATACAGGCCTACCCACCATTGTAACTGACAAAGACAAAAACTTAAGCTACAACCTCAAACCCCTAAAAAAATTAGGTCACTTCCCCTCCCAAATCTCTCTCGGCCTCGCTCTCTTAGTCTCACTCATCATCGCTCTCACCCTCATCGAGCCTCTCGGCCTTGCACTCACACTCACTCGATACACCGTCGATAACCGTGTCTCTCTCGTCGCACGTGTCGTCGGTCTTTCCACCATGAGTACTCTCTCTAGACCCGAATGGAAAAAACCATGTCCCGAGAAGAAGAAAGATATAATTCGAATAGAGAGGGAGTTCGTGATTCCGGTTCTCAAGCCCAAGCTCATCATGTCCTTGGCCAACCTTATTGCGGAGTTTTTAAAGCTCTGCAAGAGAATTGAGTCCACGATTCGGGCTTGGTATCTTCTACAATTCGAGGATTTGATGCAACTGTATTCGCTCTTTGACCCCGTACATGGCAATCAAAAATTACAGCAACAGAGTCTTTCTTCTAGAGAAATTGATGTACTGGAACATAATTTCCTCATAATGATAGAATATTGCTATTTGAGCTATTCAGGCCATGCAAATACTGAAAGGCGAGTCTGCATTGTGTCTTCATCAAGACTAGGTATCAAGTGTGTAGATCATGGATCCCATCCTCCTCTAAGAAGGGGAGGACTTCCCTTTATAGCTAAAGGAAGTCCCATTCTATTCTACATTTCCGATGTGGGACACAATATACATATTGCTTCTCTTGAAGCCTCTTGGAGATCATGGGAGGGTGGCCTCCTTATGAGGTACCAGCCGACCTCCACCATAGTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3754

Protein Analysis

288

Amino Acids

32.61

Weight (kDa)

9.36

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 837
AccB1I GGYRCC 1 cut(s) 837
AciI CCGC 1 cut(s) 407
AclWI GGATC 2 cut(s) 684, 697
AcoI YGGCCR 1 cut(s) 393
AcvI CACGTG 1 cut(s) 254
AfaI GTAC 4 cut(s) 280, 510, 564, 839
AfiI CCNNNNNNNGG 4 cut(s) 406, 447, 512, 861
AflII CTTAAG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 1 cut(s) 797
AleI CACNNNNGTG 1 cut(s) 857
AloI GAACNNNNNNTCC 2 cut(s) 561, 593
AluBI AGCT 5 cut(s) 87, 379, 421, 609, 731
AluI AGCT 5 cut(s) 87, 379, 421, 609, 731
Alw26I GTCTC 2 cut(s) 163, 244
AlwI GGATC 2 cut(s) 684, 697
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 6 cut(s) 46, 142, 196, 393, 616, 823
Asp718I GGTACC 1 cut(s) 837
AsuHPI GGTGA 1 cut(s) 169
AsuII TTCGAA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 314
BalI TGGCCA 1 cut(s) 395
BamHI GGATCC 1 cut(s) 689
BanI GGYRCC 1 cut(s) 837
BanII GRGCYC 1 cut(s) 27
BbrPI CACGTG 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 645
BccI CCATC 1 cut(s) 702
BcoDI GTCTC 2 cut(s) 163, 244
BfaI CTAG 3 cut(s) 288, 549, 665
BfrI CTTAAG 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 691, 839
BmsI GCATC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 645
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 4 cut(s) 406, 447, 512, 861
Bse1I ACTGG 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 4 cut(s) 406, 447, 512, 861
BseNI ACTGG 1 cut(s) 570
BseRI GAGGAG 1 cut(s) 690
BshFI GGCC 6 cut(s) 48, 144, 198, 395, 618, 825
BshNI GGYRCC 1 cut(s) 837
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 3 cut(s) 297, 726, 783
BslI CCNNNNNNNGG 4 cut(s) 406, 447, 512, 861
BsmAI GTCTC 2 cut(s) 163, 244
BsmFI GGGAC 3 cut(s) 297, 726, 783
BsnI GGCC 6 cut(s) 48, 144, 198, 395, 618, 825
BsoBI CYCGRG 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 3 cut(s) 682, 689, 809
BspACI CCGC 1 cut(s) 407
BspANI GGCC 6 cut(s) 48, 144, 198, 395, 618, 825
BspLI GGNNCC 2 cut(s) 691, 839
BspPI GGATC 2 cut(s) 684, 697
BspT104I TTCGAA 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 837
BspTI CTTAAG 1 cut(s) 82
BsrI ACTGG 1 cut(s) 570
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 3 cut(s) 682, 689, 809
BssT1I CCWWGG 1 cut(s) 390
Bst4CI ACNGT 3 cut(s) 226, 236, 489
BstAFI CTTAAG 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 154, 704
BstF5I GGATG 1 cut(s) 694
BstKTI GATC 3 cut(s) 685, 692, 812
BstMAI GTCTC 2 cut(s) 163, 244
BstMBI GATC 3 cut(s) 682, 689, 809
BstMWI GCNNNNNNNGC 3 cut(s) 45, 606, 615
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 689
BstYI RGATCY 1 cut(s) 689
BsuRI GGCC 6 cut(s) 48, 144, 198, 395, 618, 825
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 694
Csp6I GTAC 4 cut(s) 279, 509, 563, 838
CviAII CATG 7 cut(s) 274, 309, 385, 512, 620, 686, 813
CviQI GTAC 4 cut(s) 279, 509, 563, 838
DdeI CTNAG 2 cut(s) 154, 704
DpnI GATC 3 cut(s) 684, 691, 811
DpnII GATC 3 cut(s) 682, 689, 809
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 390
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 7 cut(s) 277, 312, 388, 515, 623, 689, 816
FaqI GGGAC 3 cut(s) 297, 726, 783
FatI CATG 7 cut(s) 273, 308, 384, 511, 619, 685, 812
FokI GGATG 1 cut(s) 681
FriOI GRGCYC 1 cut(s) 27
FspBI CTAG 3 cut(s) 288, 549, 665
HaeIII GGCC 6 cut(s) 48, 144, 198, 395, 618, 825
HapII CCGG 1 cut(s) 362
Hin1II CATG 7 cut(s) 277, 312, 388, 515, 623, 689, 816
HinfI GANTC 5 cut(s) 358, 437, 445, 538, 639
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 1 cut(s) 763
Hpy188III TCNNGA 6 cut(s) 288, 314, 355, 549, 660, 794
Hpy8I GTNNAC 1 cut(s) 441
Hpy99I CGWCG 3 cut(s) 230, 251, 263
HpyAV CCTTC 1 cut(s) 702
HpyCH4III ACNGT 3 cut(s) 226, 236, 489
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 6 cut(s) 39, 203, 426, 484, 623, 645
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 606, 615
HpyF3I CTNAG 2 cut(s) 154, 704
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 7 cut(s) 277, 312, 388, 515, 623, 689, 816
KpnI GGTACC 1 cut(s) 841
Kzo9I GATC 3 cut(s) 682, 689, 809
LpnPI CCDG 5 cut(s) 30, 375, 551, 600, 854
LweI GCATC 1 cut(s) 471
MaeI CTAG 3 cut(s) 288, 549, 665
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 61, 116
MalI GATC 3 cut(s) 684, 691, 811
MboI GATC 3 cut(s) 682, 689, 809
MboII GAAGA 5 cut(s) 331, 334, 452, 537, 645
MflI RGATCY 1 cut(s) 689
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 7 cut(s) 110, 333, 432, 467, 524, 555, 574
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 3 cut(s) 446, 547, 648
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 83, 416
MslI CAYNNNNRTG 1 cut(s) 857
Msp20I TGGCCA 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 82
MspI CCGG 1 cut(s) 362
MwoI GCNNNNNNNGC 3 cut(s) 45, 606, 615
NdeII GATC 3 cut(s) 682, 689, 809
NlaIII CATG 7 cut(s) 277, 312, 388, 515, 623, 689, 816
NlaIV GGNNCC 2 cut(s) 691, 839
NmeAIII GCCGAG 3 cut(s) 46, 120, 174
NmuCI GTSAC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 337
OliI CACNNNNGTG 1 cut(s) 857
PceI AGGCCT 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 2 cut(s) 358, 445
PleI GAGTC 3 cut(s) 445, 546, 647
PmaCI CACGTG 1 cut(s) 254
PmlI CACGTG 1 cut(s) 254
PpsI GAGTC 3 cut(s) 445, 546, 647
Ppu21I YACGTR 1 cut(s) 254
PspCI CACGTG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 691, 839
PsuI RGATCY 1 cut(s) 689
RsaI GTAC 4 cut(s) 280, 510, 564, 839
RsaNI GTAC 4 cut(s) 279, 509, 563, 838
RseI CAYNNNNRTG 1 cut(s) 857
SaqAI TTAA 2 cut(s) 83, 416
Sau3AI GATC 3 cut(s) 682, 689, 809
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 3 cut(s) 446, 547, 648
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 471
SfuI TTCGAA 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 2 cut(s) 82, 368
SmoI CTYRAG 2 cut(s) 82, 368
Sse9I AATT 7 cut(s) 110, 333, 432, 467, 524, 555, 574
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 1 cut(s) 407
SspI AATATT 1 cut(s) 596
SspMI CTAG 3 cut(s) 288, 549, 665
StuI AGGCCT 1 cut(s) 48
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 3 cut(s) 226, 236, 489
TaiI ACGT 1 cut(s) 256
TaqI TCGA 5 cut(s) 186, 217, 228, 337, 471
TaqII GACCGA 1 cut(s) 251
TasI AATT 7 cut(s) 110, 333, 432, 467, 524, 555, 574
TatI WGTACW 2 cut(s) 278, 562
TfiI GAWTC 2 cut(s) 358, 445
Tru1I TTAA 2 cut(s) 83, 416
Tru9I TTAA 2 cut(s) 83, 416
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 645
Vha464I CTTAAG 1 cut(s) 82
XbaI TCTAGA 2 cut(s) 287, 548
XspI CTAG 3 cut(s) 288, 549, 665
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.