Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Forward (+)

39708174 .. 39712034

Gene Structure 3861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGGAAGCTCAAGAAAGACATTATTCGTTTAGAGAAAGAAAAAGTCATTCGAGTTGCCAAGAAGGATCTCATCAGTCACATCACAACAGTTCTCGAAACCGATCCCGACAGCAGTTCGAAGCTGGATGAGTTTTTGAAGCTATGTAAGAGGGTCGAGTACACAATTCGGGCTTGGCATAATTTAGAATTTCAGGATATGATGAACATCTATACCCTATTTGATCCTCTACACGGATCCAAGAAGTTGAAAAAAGATGGACATACTCTAACTTCAGAAGAAATTGGTGATCTTGAACAAAGGTTTCTCACACACATGTTTCAGGTGATGGACAAGAGTCATTTTAAGATTGCAGATAATGAAGAAATTGAGGTTGCGAATTCAGGGCAGTATCTTCTACATCTTCCCATCGTGGTTGATGAGTCTAAGCTTGACAACAAACTTTTGAAGAAATATTTTGAAGATCATCCTACCGAAAACATTCCAGATTTTTCTGATAAGTATGTCATCTTCCGACGCGGCATTGGACTTGATAAGAAAACTGATTGGTTTTTCATGGAGAAGGTGGACATTATCATTTCACGTATTTGGAAATATTTTTTACAAATAACAACGTTAGACAAAGTTTTCAATAAAAATACACCTGCAGCCCCTAAGAAGAGGGATTCAGAATCTGAGACAGATGAGGATGACTTCTTTGTTGAACGAATCCGTCTTGACAGCATGGATCTAAGCCTTCAAAATTTGCTTCTTATGAACACAATCCAGGAGCCAACTTTTGAAAGGATTATTGTTGTTTACAGGCAAGCAACTACCGATGAGGATCTTCCAGAACGGGGAATACATATAAAGCATTTCAAAAATATCCCAATGGCTGATTTGGAGATAGTTCTTCCTGAAAAGAAGAACCCAGGTTTAACACCAATGGACTGGCTTTCATTCATAGGCTCTGCTGTAGTTGGTCTGCAGAACTTAGCTGCGTATCAGAGTTTGATAACAGAGTCCATGTACGAAAAACAACTAGATAGTGGAAGGGGAACTCTTCTTAACTTATGTGATGACGTGATTCAACAGGAAGATCTGGACTACAAGTGTGAGTGGCTGATAAAAGAATGGTATAAGGACGAAATCAATTTTGATGTGGACGATGCAGTTAAGAAGCTAGAGAAATTGGAAATTGTTACTAAGGATAGCGAGGGACTGTATAGCACTGTTGGGCTGGAACGTGCCAACAAGATCATTGGCACCACCACTGAGGAGGTTGTCCTGAGCGCCAAGTATAAAGAAATGAGAGCTGAAAGTGAAGCTCATGGTGATCATGCTATTGGTAAAGCTAGTGTTGCTGAGCCTGAAGACGCTATGACGTCCAACGAAGAAAGAGAACGTCTACTCGCTGGGTTTGCCGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3754

Protein Analysis

471

Amino Acids

54.43

Weight (kDa)

4.99

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3754	PF12576	260 - 322	9.6e-10	Protein of unknown function (DUF3754)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
AatII	GACGTC	1 cut(s)	1367
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	1244
AccI	GTMKAC	1 cut(s)	1387
AccII	CGCG	1 cut(s)	519
AciI	CCGC	1 cut(s)	519
AclI	AACGTT	1 cut(s)	614
AclWI	GGATC	7 cut(s)	75, 98, 218, 231, 244, 735, 831
AcsI	RAATTY	3 cut(s)	188, 379, 742
AcuI	CTGAAG	2 cut(s)	258, 1371
AcyI	GRCGYC	1 cut(s)	1364
AfaI	GTAC	2 cut(s)	161, 1010
AfiI	CCNNNNNNNGG	2 cut(s)	233, 836
AflIII	ACRYGT	1 cut(s)	315
AjiI	CACGTC	1 cut(s)	1063
AjnI	CCWGG	2 cut(s)	765, 910
AluBI	AGCT	9 cut(s)	10, 124, 142, 430, 977, 1162, 1295, 1307, 1334
AluI	AGCT	9 cut(s)	10, 124, 142, 430, 977, 1162, 1295, 1307, 1334
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	7 cut(s)	75, 98, 218, 231, 244, 735, 831
AlwNI	CAGNNNCTG	1 cut(s)	674
ApeKI	GCWGC	2 cut(s)	647, 977
ApoI	RAATTY	3 cut(s)	188, 379, 742
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	1274
AsuHPI	GGTGA	3 cut(s)	299, 337, 1325
AsuII	TTCGAA	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	1244
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
BbsI	GAAGAC	1 cut(s)	1359
BbvI	GCAGC	2 cut(s)	659, 964
BccI	CCATC	3 cut(s)	251, 322, 416
BciT130I	CCWGG	2 cut(s)	767, 912
BclI	TGATCA	1 cut(s)	1315
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	3 cut(s)	1022, 1163, 1335
BfmI	CTRYAG	3 cut(s)	645, 954, 965
BfoI	RGCGCY	1 cut(s)	1275
BfuAI	ACCTGC	1 cut(s)	652
BglII	AGATCT	1 cut(s)	1078
BisI	GCNGC	3 cut(s)	520, 648, 978
BlpI	GCTNAGC	1 cut(s)	1344
BlsI	GCNGC	3 cut(s)	521, 649, 979
Bme1390I	CCNGG	2 cut(s)	767, 912
BmgBI	CACGTC	1 cut(s)	1063
BmiI	GGNNCC	3 cut(s)	238, 771, 1246
BmrFI	CCNGG	2 cut(s)	767, 912
BmsI	GCATC	1 cut(s)	1138
BoxI	GACNNNNGTC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	1359
Bpu10I	CCTNAGC	1 cut(s)	1268
Bpu1102I	GCTNAGC	1 cut(s)	1344
Bpu14I	TTCGAA	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	584
BsaBI	GATNNNNATC	2 cut(s)	206, 822
BsaHI	GRCGYC	1 cut(s)	1364
BsaJI	CCNNGG	2 cut(s)	910, 1404
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 836
Bse1I	ACTGG	1 cut(s)	935
Bse8I	GATNNNNATC	2 cut(s)	206, 822
BseBI	CCWGG	2 cut(s)	767, 912
BseDI	CCNNGG	2 cut(s)	910, 1404
BseGI	GGATG	3 cut(s)	133, 466, 694
BseJI	GATNNNNATC	2 cut(s)	206, 822
BseLI	CCNNNNNNNGG	2 cut(s)	233, 836
BseMII	CTCAG	4 cut(s)	666, 1245, 1259, 1335
BseNI	ACTGG	1 cut(s)	935
BseRI	GAGGAG	1 cut(s)	1271
BseXI	GCAGC	2 cut(s)	659, 964
BseYI	CCCAGC	1 cut(s)	1394
Bsh1236I	CGCG	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	1244
BslFI	GGGAC	1 cut(s)	1212
BslI	CCNNNNNNNGG	2 cut(s)	233, 836
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	1212
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1720I	GCTNAGC	1 cut(s)	1344
BspACI	CCGC	1 cut(s)	519
BspCNI	CTCAG	4 cut(s)	667, 1246, 1260, 1336
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	238, 771, 1246
BspMAI	CTGCAG	2 cut(s)	649, 969
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	7 cut(s)	75, 98, 218, 231, 244, 735, 831
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	1244
BsrI	ACTGG	1 cut(s)	935
BssECI	CCNNGG	2 cut(s)	910, 1404
BssNI	GRCGYC	1 cut(s)	1364
Bst2UI	CCWGG	2 cut(s)	767, 912
Bst4CI	ACNGT	3 cut(s)	91, 1203, 1213
Bst6I	CTCTTC	2 cut(s)	653, 1047
BstACI	GRCGYC	1 cut(s)	1364
BstBAI	YACGTR	1 cut(s)	584
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	9 cut(s)	426, 654, 675, 731, 973, 1185, 1254, 1268, 1344
BstF5I	GGATG	3 cut(s)	133, 466, 694
BstFNI	CGCG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	1275
BstHHI	GCGC	1 cut(s)	1274
BstMAI	GTCTC	1 cut(s)	671
BstMWI	GCNNNNNNNGC	2 cut(s)	1340, 1400
BstNI	CCWGG	2 cut(s)	767, 912
BstNSI	RCATGY	1 cut(s)	319
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	765, 910
BstSFI	CTRYAG	3 cut(s)	645, 954, 965
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	659, 964
BstV2I	GAAGAC	1 cut(s)	1359
BstX2I	RGATCY	5 cut(s)	67, 236, 727, 823, 1078
BstXI	CCANNNNNNTGG	1 cut(s)	930
BstYI	RGATCY	5 cut(s)	67, 236, 727, 823, 1078
BtrI	CACGTC	1 cut(s)	1063
BtsCI	GGATG	3 cut(s)	133, 466, 694
BtsIMutI	CAGTG	2 cut(s)	1209, 1251
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	807
CaiI	CAGNNNCTG	1 cut(s)	674
CfoI	GCGC	1 cut(s)	1274
CseI	GACGC	2 cut(s)	525, 1364
Csp6I	GTAC	2 cut(s)	160, 1009
CviAII	CATG	6 cut(s)	316, 556, 724, 1006, 1310, 1319
CviQI	GTAC	2 cut(s)	160, 1009
DdeI	CTNAG	9 cut(s)	426, 654, 675, 731, 973, 1185, 1254, 1268, 1344
Eam1104I	CTCTTC	2 cut(s)	653, 1047
EarI	CTCTTC	2 cut(s)	653, 1047
Eco57I	CTGAAG	2 cut(s)	258, 1371
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	765, 910
FaeI	CATG	6 cut(s)	319, 559, 727, 1009, 1313, 1322
FaqI	GGGAC	1 cut(s)	1212
FatI	CATG	6 cut(s)	315, 555, 723, 1005, 1309, 1318
FbaI	TGATCA	1 cut(s)	1315
FblI	GTMKAC	1 cut(s)	1387
Fnu4HI	GCNGC	3 cut(s)	520, 648, 978
FokI	GGATG	3 cut(s)	140, 453, 701
Fsp4HI	GCNGC	3 cut(s)	520, 648, 978
FspBI	CTAG	3 cut(s)	1022, 1163, 1335
GlaI	GCGC	1 cut(s)	1273
GluI	GCNGC	3 cut(s)	520, 648, 978
GsaI	CCCAGC	1 cut(s)	1398
HaeII	RGCGCY	1 cut(s)	1275
HgaI	GACGC	2 cut(s)	525, 1364
HhaI	GCGC	1 cut(s)	1274
Hin1I	GRCGYC	1 cut(s)	1364
Hin1II	CATG	6 cut(s)	319, 559, 727, 1009, 1313, 1322
Hin6I	GCGC	1 cut(s)	1272
HinP1I	GCGC	1 cut(s)	1272
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	7 cut(s)	337, 422, 665, 671, 708, 1001, 1066
HphI	GGTGA	3 cut(s)	299, 337, 1325
Hpy166II	GTNNAC	5 cut(s)	162, 568, 799, 1144, 1388
Hpy188I	TCNGA	6 cut(s)	277, 496, 515, 670, 676, 987
Hpy8I	GTNNAC	5 cut(s)	162, 568, 799, 1144, 1388
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	4 cut(s)	58, 556, 746, 1026
HpyCH4III	ACNGT	3 cut(s)	91, 1203, 1213
HpyCH4IV	ACGT	6 cut(s)	583, 614, 1062, 1225, 1364, 1384
HpyCH4V	TGCA	4 cut(s)	353, 647, 967, 1151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1340, 1400
HpyF3I	CTNAG	9 cut(s)	426, 654, 675, 731, 973, 1185, 1254, 1268, 1344
HpySE526I	ACGT	6 cut(s)	583, 614, 1062, 1225, 1364, 1384
Hsp92I	GRCGYC	1 cut(s)	1364
Hsp92II	CATG	6 cut(s)	319, 559, 727, 1009, 1313, 1322
HspAI	GCGC	1 cut(s)	1272
Ksp22I	TGATCA	1 cut(s)	1315
LmnI	GCTCC	1 cut(s)	769
Lsp1109I	GCAGC	2 cut(s)	659, 964
LweI	GCATC	1 cut(s)	1138
MaeI	CTAG	3 cut(s)	1022, 1163, 1335
MaeII	ACGT	6 cut(s)	583, 614, 1062, 1225, 1364, 1384
MaeIII	GTNAC	2 cut(s)	77, 1180
MflI	RGATCY	5 cut(s)	67, 236, 727, 823, 1078
MlyI	GAGTC	3 cut(s)	346, 431, 1010
MmeI	TCCRAC	2 cut(s)	538, 1392
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	4 cut(s)	345, 917, 1047, 1155
MslI	CAYNNNNRTG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	767, 912
MvaI	CCWGG	2 cut(s)	767, 912
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	1340, 1400
NlaIII	CATG	6 cut(s)	319, 559, 727, 1009, 1313, 1322
NlaIV	GGNNCC	3 cut(s)	238, 771, 1246
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	119
PaqCI	CACCTGC	1 cut(s)	652
PciI	ACATGT	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	4 cut(s)	665, 671, 708, 1066
PfoI	TCCNGGA	1 cut(s)	765
PkrI	GCNGC	3 cut(s)	521, 649, 979
PleI	GAGTC	3 cut(s)	345, 430, 1009
PpsI	GAGTC	3 cut(s)	345, 430, 1009
Ppu21I	YACGTR	1 cut(s)	584
PscI	ACATGT	1 cut(s)	315
PshAI	GACNNNNGTC	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	765, 910
PspFI	CCCAGC	1 cut(s)	1394
PspGI	CCWGG	2 cut(s)	765, 910
PspN4I	GGNNCC	3 cut(s)	238, 771, 1246
PsrI	GAACNNNNNNTAC	2 cut(s)	825, 857
PstI	CTGCAG	2 cut(s)	649, 969
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	5 cut(s)	67, 236, 727, 823, 1078
RsaI	GTAC	2 cut(s)	161, 1010
RsaNI	GTAC	2 cut(s)	160, 1009
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	345, 917, 1047, 1155
SatI	GCNGC	3 cut(s)	520, 648, 978
SchI	GAGTC	3 cut(s)	346, 431, 1010
ScrFI	CCNGG	2 cut(s)	767, 912
SfaNI	GCATC	1 cut(s)	1138
SfcI	CTRYAG	3 cut(s)	645, 954, 965
SfuI	TTCGAA	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SsiI	CCGC	1 cut(s)	519
SspI	AATATT	2 cut(s)	455, 596
SspMI	CTAG	3 cut(s)	1022, 1163, 1335
StyD4I	CCNGG	2 cut(s)	765, 910
TaaI	ACNGT	3 cut(s)	91, 1203, 1213
TaiI	ACGT	6 cut(s)	586, 617, 1065, 1228, 1367, 1387
TaqI	TCGA	4 cut(s)	52, 96, 119, 156
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	4 cut(s)	665, 671, 708, 1066
Tru1I	TTAA	4 cut(s)	345, 917, 1047, 1155
Tru9I	TTAA	4 cut(s)	345, 917, 1047, 1155
TscAI	CASTG	2 cut(s)	1216, 1258
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	647, 977
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	6 cut(s)	218, 375, 544, 770, 927, 931
TspGWI	ACGGA	2 cut(s)	249, 701
TspRI	CASTG	2 cut(s)	1216, 1258
XapI	RAATTY	3 cut(s)	188, 379, 742
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	1387
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	3 cut(s)	1022, 1163, 1335
ZraI	GACGTC	1 cut(s)	1365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.