RLG00000030813

Protein of unknown function (DUF3754)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
68007012 .. 68010683
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030813

Sequence Viewer

Length: 450 bp
ATGTGGAGAATGATGGGAAGCCAAAGAGGACACGCCGTCAGCGAGCTCGGTGACCGGAGCTTATTCTTCATCATCTGCAACCAGCTCTATTCAAGATCACTGCGACACCAAAGACTTCTACTCCTACCTCAACATAGTTCTAACCAGGCAGAGTTTTTAAAGCTCTGCAAGAGAATTGAGTACACGATTCAGGCTTGGTATCTTCTACAATTCGAGGATTTGATGCAACTGTATTCGCTCTTTGACCCCGTACAAAAATTGCAACAACAGAGTCTTTCTTCTAAAGAAATTGATATACTGGAACAGAATTTCCTCATGTACTTATTTCAGGTGATGGAAAAGAGTAATTTCAAGATTGCAACTGATGAAGAAATTGAGATTCTGCATTTGAGGCAGTATTTTCTAAGTCTTCCCATTGTGATTGATGAATCTAAGCTTGATGGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

17.77

Weight (kDa)

5.79

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 3 cut(s) 182, 252, 320
AgsI TTSAA 2 cut(s) 93, 352
AhdI GACNNNNNGTC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 144
AloI GAACNNNNNNTCC 2 cut(s) 294, 326
AluBI AGCT 6 cut(s) 46, 60, 85, 163, 436, 447
AluI AGCT 6 cut(s) 46, 60, 85, 163, 436, 447
Alw21I GWGCWC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 62, 343
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 48
BccI CCATC 3 cut(s) 7, 328, 434
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 146
BisI GCNGC 1 cut(s) 445
BlsI GCNGC 1 cut(s) 446
Bme1390I CCNGG 1 cut(s) 146
BmeRI GACNNNNNGTC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 303
BssMI GATC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 404, 432
BstEII GGTNACC 1 cut(s) 50
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 401
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 44
Csp6I GTAC 3 cut(s) 181, 251, 319
CviAII CATG 1 cut(s) 316
CviJI RGCY 8 cut(s) 21, 46, 60, 85, 163, 194, 436, 447
CviKI_1 RGCY 8 cut(s) 21, 46, 60, 85, 163, 194, 436, 447
CviQI GTAC 3 cut(s) 181, 251, 319
DdeI CTNAG 2 cut(s) 404, 432
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
DraI TTTAAA 1 cut(s) 159
DriI GACNNNNNGTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 319
FaiI YATR 3 cut(s) 135, 296, 317
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 445
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 445
GluI GCNGC 1 cut(s) 445
HapII CCGG 1 cut(s) 55
Hin1II CATG 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 4 cut(s) 187, 271, 379, 428
HpaII CCGG 1 cut(s) 55
HphI GGTGA 2 cut(s) 62, 343
Hpy166II GTNNAC 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 93, 352
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 6 cut(s) 78, 168, 226, 262, 359, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 2 cut(s) 404, 432
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 7 cut(s) 68, 95, 131, 158, 176, 284, 314
LweI GCATC 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 50
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 5 cut(s) 58, 194, 270, 380, 401
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 7 cut(s) 174, 209, 257, 288, 307, 346, 372
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 5 cut(s) 20, 138, 208, 323, 384
MseI TTAA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 447
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 391
NdeII GATC 1 cut(s) 95
NlaIII CATG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 3 cut(s) 187, 379, 428
PkrI GCNGC 1 cut(s) 446
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 144
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 447
RsaI GTAC 3 cut(s) 182, 252, 320
RsaNI GTAC 3 cut(s) 181, 251, 319
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 445
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 48
SetI ASST 8 cut(s) 48, 62, 87, 130, 165, 333, 438, 449
SfaNI GCATC 1 cut(s) 213
Sse9I AATT 7 cut(s) 174, 209, 257, 288, 307, 346, 372
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 213
TasI AATT 7 cut(s) 174, 209, 257, 288, 307, 346, 372
TatI WGTACW 2 cut(s) 180, 318
TfiI GAWTC 3 cut(s) 187, 379, 428
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 444
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 58, 381, 441
TspRI CASTG 1 cut(s) 105
XapI RAATTY 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.