Rh4DG067200

Protein of unknown function (DUF3754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000718
Physical Location & Seq
Forward (+)
10072175 .. 10075018
2844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG067200.1

Sequence Viewer

Length: 180 bp
ATGTCAGACTACGGTCTTCTTGGCAATGAAGCACTGTTCTGCATAATTACAAGTATAGAGGTGATGGAAAAGAGTAATTTCAAGATTGCAACTGATGAAGAAATTGAGATTGCGCATTTGGGGCACTATTTTCTAAGTCTTCCCATTGTGGTTGATGAATCTAAGCTTGATGGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3754

Protein Analysis

59

Amino Acids

6.55

Weight (kDa)

4.24

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 114
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 2 cut(s) 166, 177
AluI AGCT 2 cut(s) 166, 177
ApeKI GCWGC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 8, 131
BccI CCATC 2 cut(s) 58, 164
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 12
BpiI GAAGAC 2 cut(s) 8, 131
Bse3DI GCAATG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 14, 36
BstDEI CTNAG 2 cut(s) 134, 162
BstHHI GCGC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 126
BstV2I GAAGAC 2 cut(s) 8, 131
BtsIMutI CAGTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 115
CviJI RGCY 2 cut(s) 166, 177
CviKI_1 RGCY 2 cut(s) 166, 177
DdeI CTNAG 2 cut(s) 134, 162
FaiI YATR 2 cut(s) 44, 56
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 115
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 14, 36
HpyCH4V TGCA 2 cut(s) 42, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 2 cut(s) 134, 162
HspAI GCGC 1 cut(s) 113
MboII GAAGA 3 cut(s) 8, 110, 131
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 3 cut(s) 45, 76, 102
MnlI CCTC 1 cut(s) 52
MspA1I CMGCKG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 121
NsbI TGCGCA 1 cut(s) 114
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 177
SatI GCNGC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 126
SetI ASST 3 cut(s) 63, 168, 179
SgeI CNNG 3 cut(s) 32, 63, 94
Sse9I AATT 3 cut(s) 45, 76, 102
TaaI ACNGT 2 cut(s) 14, 36
TasI AATT 3 cut(s) 45, 76, 102
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 3 cut(s) 42, 111, 171
TspRI CASTG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.