Rh3AG109000

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
9204810 .. 9205826
1017 bp
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UTR
Exon/CDS
Intron
Rh3AG109000.1

Sequence Viewer

Length: 246 bp
ATGAGTGCATCATTGTCGATTTCGAGCAAATTCATCAGAGAGAGAGGAAGAAGGAAGAAAAGAAGAGGAGGGGGACGGGAACGTCTCAGGGAAATCATCAGCCCGGGCAGTCCAACCCGAAGTTGTTGGTTGCCGTCCAGCAGAATCCTAATATTGATGACTGGATACTTGAGTGATGCAACTATGGCTGAGGATGCCTTATCTATTTGCATGACTATAATGATTGGGAGCTCATATTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.06

Weight (kDa)

10.82

Isoelectric Point (pI)

88.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 29
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 103
ApoI RAATTY 1 cut(s) 29
AsuC2I CCSGG 2 cut(s) 104, 105
AvaI CYCGRG 1 cut(s) 103
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BanII GRGCYC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 189
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 1 cut(s) 31
BciVI GTATCC 1 cut(s) 158
BcnI CCSGG 2 cut(s) 104, 105
BcoDI GTCTC 1 cut(s) 89
BfuI GTATCC 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 104, 105
BmeT110I CYCGRG 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 104, 105
BmsI GCATC 3 cut(s) 17, 166, 184
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 190
BpuMI CCSGG 2 cut(s) 104, 105
BsaJI CCNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 100, 180
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 233
BspCNI CTCAG 2 cut(s) 99, 181
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 86, 189
BstF5I GGATG 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 185, 194
BstSCI CCNGG 2 cut(s) 102, 103
BsuI GTATCC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 199
Cfr9I CCCGGG 1 cut(s) 103
CviAII CATG 1 cut(s) 211
CviJI RGCY 3 cut(s) 102, 188, 231
CviKI_1 RGCY 3 cut(s) 102, 188, 231
DdeI CTNAG 2 cut(s) 86, 189
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 214
FaiI YATR 4 cut(s) 185, 212, 218, 235
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 210
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 233
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 214
HinfI GANTC 1 cut(s) 144
HpaII CCGG 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 8, 179, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 194
HpyF3I CTNAG 2 cut(s) 86, 189
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 214
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 73, 117, 147, 151
LweI GCATC 3 cut(s) 17, 166, 184
MaeII ACGT 1 cut(s) 82
MboII GAAGA 3 cut(s) 60, 67, 75
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 4 cut(s) 38, 59, 62, 184
MseI TTAA 1 cut(s) 244
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 104, 105
MwoI GCNNNNNNNGC 2 cut(s) 185, 194
NciI CCSGG 2 cut(s) 104, 105
NlaIII CATG 1 cut(s) 214
PfeI GAWTC 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 233
SacI GAGCTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 244
ScrFI CCNGG 2 cut(s) 104, 105
SduI GDGCHC 1 cut(s) 233
SetI ASST 2 cut(s) 85, 233
SfaNI GCATC 3 cut(s) 17, 166, 184
SmaI CCCGGG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SrfI GCCCGGGC 1 cut(s) 105
Sse9I AATT 1 cut(s) 29
SspI AATATT 1 cut(s) 153
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 102, 103
TaiI ACGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 17, 23
TasI AATT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 244
Tru9I TTAA 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 22
TspMI CCCGGG 1 cut(s) 103
XapI RAATTY 1 cut(s) 29
XmaI CCCGGG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.