Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Forward (+)

3809407 .. 3814513

Gene Structure 5107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGTGCATCATTGTCGATTTCGAGCAAATTCATCAGGGACAGAGAGAGAGAGGAAGAAGAGGAGGGGGACGGGAAGCTCTCAGGGAAATCATCAGTCCGGGCAGTCCAACCCGAAGTTGTTGGTGGCCGTCCAGCAGTTGTGGAGTTTTCGGCAGAGATTCATGACTTTGTAGTTGAGGATAAAGCCAAGTTGTACCCTTCTGTTAAAGATGGTGTATTGGTCAAGTTACCTCTTGCGATCGATGTATTGGTTAAGTCAACTGTTATAATCCTAATATTGATGACTGGATACTTGAGTGATGCAACTATGGCTGAGGATGCCTTATCTGTTTGTTTTCAGCAGAACTTGGCTGCATATCAGAACCTAATAACCACACAGTCCATGTATGACAAGCAACTGGATAGCGGAAGGGGTACTCTTCTGATGATCTGGCCGGATAGGTGGTGTGAGGAACTCATTAAAGAAGAGTTTGGTGCCAGTTGTAATTTTGATGTGGATGATGCAGTTGGGAAGTTGGAGAAATTGGGAATTGTCTCTCGGGATTCCGTTGGACGGTATTTCTGCAATGGGCTGAAACGTGCGAATGAAATAATTGGGACCACCACTGAGGAGCTTGTTATGAGGGCAAAACAAGGCACACAAGGCAGTACTGAAGTATTGAAAATTCGTAGCGATCGCATATTGTATGAAGTATGTATTTTGAATGTGCAGCAACAAGTTGATATTATTAACTTTGTGGAGTACCTTGAAATAGCTGGTTGGATTCGTGTAATCTTCAGCGTGGCAGCTGCAGTACAGGGTGTGCTTGTAAATCGAAGAACCATGATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3754

Protein Analysis

278

Amino Acids

30.85

Weight (kDa)

4.91

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	476
AciI	CCGC	1 cut(s)	408
AcoI	YGGCCR	2 cut(s)	127, 434
AcsI	RAATTY	2 cut(s)	29, 666
AcuI	CTGAAG	2 cut(s)	675, 763
AfaI	GTAC	5 cut(s)	197, 418, 652, 746, 798
AfiI	CCNNNNNNNGG	1 cut(s)	555
AgsI	TTSAA	3 cut(s)	664, 706, 752
AluBI	AGCT	4 cut(s)	79, 616, 758, 791
AluI	AGCT	4 cut(s)	79, 616, 758, 791
Alw26I	GTCTC	1 cut(s)	541
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	2 cut(s)	127, 434
ApeKI	GCWGC	4 cut(s)	353, 712, 788, 791
ApoI	RAATTY	2 cut(s)	29, 666
AsiSI	GCGATCGC	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	600
AsuC2I	CCSGG	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	600
BaeI	ACNNNNGTAYC	2 cut(s)	283, 316
BanI	GGYRCC	1 cut(s)	476
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	4 cut(s)	340, 724, 778, 800
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	541
BfmI	CTRYAG	1 cut(s)	792
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	4 cut(s)	354, 713, 789, 792
BlsI	GCNGC	4 cut(s)	355, 714, 790, 793
BmcAI	AGTACT	1 cut(s)	652
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	600
BmeT110I	CYCGRG	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	2 cut(s)	478, 601
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	4 cut(s)	17, 292, 310, 493
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse1I	ACTGG	3 cut(s)	292, 405, 480
Bse3DI	GCAATG	1 cut(s)	574
BseCI	ATCGAT	1 cut(s)	243
BseGI	GGATG	2 cut(s)	325, 505
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	3 cut(s)	96, 306, 600
BseNI	ACTGG	3 cut(s)	292, 405, 480
BseRI	GAGGAG	2 cut(s)	77, 626
BseXI	GCAGC	4 cut(s)	340, 724, 778, 800
BsgI	GTGCAG	1 cut(s)	731
Bsh1285I	CGRYCG	2 cut(s)	243, 679
BshFI	GGCC	2 cut(s)	129, 436
BshNI	GGYRCC	1 cut(s)	476
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	2 cut(s)	243, 679
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	2 cut(s)	100, 437
BslFI	GGGAC	3 cut(s)	53, 83, 613
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	3 cut(s)	53, 83, 613
BsnI	GGCC	2 cut(s)	129, 436
BsoBI	CYCGRG	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	240, 429, 676
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	2 cut(s)	129, 436
BspCNI	CTCAG	3 cut(s)	95, 307, 601
BspDI	ATCGAT	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	478, 601
BspMAI	CTGCAG	1 cut(s)	796
BspT107I	GGYRCC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	574
BsrI	ACTGG	3 cut(s)	292, 405, 480
BssMI	GATC	3 cut(s)	240, 429, 676
Bst4CI	ACNGT	3 cut(s)	265, 381, 558
Bst6I	CTCTTC	3 cut(s)	54, 426, 462
BstDEI	CTNAG	3 cut(s)	82, 315, 609
BstF5I	GGATG	2 cut(s)	325, 505
BstKTI	GATC	3 cut(s)	243, 432, 679
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	3 cut(s)	240, 429, 676
BstMCI	CGRYCG	2 cut(s)	243, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 320, 645
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	792
BstV1I	GCAGC	4 cut(s)	340, 724, 778, 800
Bsu15I	ATCGAT	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	129, 436
BsuTUI	ATCGAT	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	325, 505
BtsIMutI	CAGTG	1 cut(s)	606
CciI	TCATGA	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	600
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	5 cut(s)	196, 417, 651, 745, 797
CviAII	CATG	4 cut(s)	164, 385, 826, 834
CviQI	GTAC	5 cut(s)	196, 417, 651, 745, 797
DdeI	CTNAG	3 cut(s)	82, 315, 609
DpnI	GATC	3 cut(s)	242, 431, 678
DpnII	GATC	3 cut(s)	240, 429, 676
EaeI	YGGCCR	2 cut(s)	127, 434
Eam1104I	CTCTTC	3 cut(s)	54, 426, 462
EarI	CTCTTC	3 cut(s)	54, 426, 462
Eco47I	GGWCC	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	675, 763
Eco88I	CYCGRG	1 cut(s)	540
FaeI	CATG	4 cut(s)	167, 388, 829, 837
FaqI	GGGAC	3 cut(s)	53, 83, 613
FatI	CATG	4 cut(s)	163, 384, 825, 833
Fnu4HI	GCNGC	4 cut(s)	354, 713, 789, 792
FokI	GGATG	2 cut(s)	332, 512
Fsp4HI	GCNGC	4 cut(s)	354, 713, 789, 792
GluI	GCNGC	4 cut(s)	354, 713, 789, 792
HaeIII	GGCC	2 cut(s)	129, 436
HapII	CCGG	2 cut(s)	100, 437
Hin1II	CATG	4 cut(s)	167, 388, 829, 837
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	3 cut(s)	160, 545, 766
HpaII	CCGG	2 cut(s)	100, 437
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	363, 426
Hpy188III	TCNNGA	2 cut(s)	164, 542
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	2 cut(s)	210, 405
HpyCH4III	ACNGT	3 cut(s)	265, 381, 558
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	8 cut(s)	8, 305, 356, 506, 567, 712, 794, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 320, 645
HpyF3I	CTNAG	3 cut(s)	82, 315, 609
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	4 cut(s)	167, 388, 829, 837
Kzo9I	GATC	3 cut(s)	240, 429, 676
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	4 cut(s)	340, 724, 778, 800
LweI	GCATC	4 cut(s)	17, 292, 310, 493
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	3 cut(s)	242, 431, 678
MboI	GATC	3 cut(s)	240, 429, 676
MboII	GAAGA	6 cut(s)	68, 71, 413, 479, 769, 831
MluCI	AATT	6 cut(s)	29, 487, 524, 531, 594, 666
MmeI	TCCRAC	4 cut(s)	133, 498, 532, 743
MnlI	CCTC	9 cut(s)	46, 55, 58, 172, 243, 310, 445, 604, 618
MseI	TTAA	4 cut(s)	207, 255, 462, 732
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	2 cut(s)	100, 437
MspR9I	CCNGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	311, 320, 645
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	3 cut(s)	240, 429, 676
NlaIII	CATG	4 cut(s)	167, 388, 829, 837
NlaIV	GGNNCC	2 cut(s)	478, 601
PagI	TCATGA	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	160, 545, 766
PkrI	GCNGC	4 cut(s)	355, 714, 790, 793
Ple19I	CGATCG	2 cut(s)	243, 679
PsiI	TTATAA	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	478, 601
PspPI	GGNCC	1 cut(s)	600
PstI	CTGCAG	1 cut(s)	796
PvuI	CGATCG	2 cut(s)	243, 679
PvuII	CAGCTG	1 cut(s)	791
RgaI	GCGATCGC	1 cut(s)	679
RsaI	GTAC	5 cut(s)	197, 418, 652, 746, 798
RsaNI	GTAC	5 cut(s)	196, 417, 651, 745, 797
SaqAI	TTAA	4 cut(s)	207, 255, 462, 732
SatI	GCNGC	4 cut(s)	354, 713, 789, 792
Sau3AI	GATC	3 cut(s)	240, 429, 676
Sau96I	GGNCC	1 cut(s)	600
ScaI	AGTACT	1 cut(s)	652
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	9 cut(s)	81, 235, 369, 446, 583, 618, 750, 760, 793
SfaAI	GCGATCGC	1 cut(s)	679
SfaNI	GCATC	4 cut(s)	17, 292, 310, 493
SfcI	CTRYAG	1 cut(s)	792
SgfI	GCGATCGC	1 cut(s)	679
SinI	GGWCC	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	6 cut(s)	29, 487, 524, 531, 594, 666
SsiI	CCGC	1 cut(s)	408
SspI	AATATT	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	265, 381, 558
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	4 cut(s)	17, 23, 243, 817
TasI	AATT	6 cut(s)	29, 487, 524, 531, 594, 666
TatI	WGTACW	2 cut(s)	650, 796
TfiI	GAWTC	3 cut(s)	160, 545, 766
Tru1I	TTAA	4 cut(s)	207, 255, 462, 732
Tru9I	TTAA	4 cut(s)	207, 255, 462, 732
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	4 cut(s)	353, 712, 788, 791
TspDTI	ATGAA	4 cut(s)	22, 152, 603, 705
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	2 cut(s)	29, 666
ZrmI	AGTACT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.