Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Forward (+)

88344800 .. 88345637

Gene Structure 838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTACGAAAAACAACTAGATAGTGGAAGGGGAACTCTTCTTCACTTGTGTGATGATGTGATTCAACAGGAAGTCAAGGAAGTAATAGTTTCTTTCTATATGTTAATGGAACAAGGGAAAGCTACTTTACCTGATCTGGACAAGTGGTGTGAGGACCTAATCAAAGAACAGTTTAACGACGATATCAATTTTGATGTGGACGATGCAGTTAAGAAGTTAGAGAAATTGGGAATTGTTACTCAGGATACCCTTGGACGGTATAGCGCTGTTGGGCTGAAACGTGCTAACGAGATCATTGGCACCACCACTGAGGAGGTTGTCCTCAAGGTAAAACAAGATGCTGCTAATGCTCCTGCTTCTTCTGCAGCTGCTGCGGTTGCTGCCGCTGGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3754

Protein Analysis

131

Amino Acids

14.37

Weight (kDa)

4.52

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	2 cut(s)	374, 384
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	122, 368
AluI	AGCT	2 cut(s)	122, 368
AlwNI	CAGNNNCTG	1 cut(s)	371
Aor51HI	AGCGCT	1 cut(s)	265
ApeKI	GCWGC	5 cut(s)	341, 365, 368, 371, 380
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	299
BbvI	GCAGC	5 cut(s)	328, 355, 358, 367, 377
BciVI	GTATCC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	6 cut(s)	342, 366, 369, 372, 381, 384
BlsI	GCNGC	6 cut(s)	343, 367, 370, 373, 382, 385
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	301
BmsI	GCATC	2 cut(s)	193, 328
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	254, 300
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	5 cut(s)	328, 355, 358, 367, 377
BshNI	GGYRCC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	133, 291
BspACI	CCGC	2 cut(s)	374, 384
BspCNI	CTCAG	2 cut(s)	253, 301
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	133, 291
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	171, 258
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	240, 309
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	136, 294
BstMBI	GATC	2 cut(s)	133, 291
BstMWI	GCNNNNNNNGC	5 cut(s)	347, 362, 371, 377, 380
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	5 cut(s)	328, 355, 358, 367, 377
BsuI	GTATCC	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	306
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	3 cut(s)	122, 274, 368
CviKI_1	RGCY	3 cut(s)	122, 274, 368
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	240, 309
DpnI	GATC	2 cut(s)	135, 293
DpnII	GATC	2 cut(s)	133, 291
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	154
Eco47III	AGCGCT	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaiI	YATR	3 cut(s)	99, 101, 261
Fnu4HI	GCNGC	6 cut(s)	342, 366, 369, 372, 381, 384
Fsp4HI	GCNGC	6 cut(s)	342, 366, 369, 372, 381, 384
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	6 cut(s)	342, 366, 369, 372, 381, 384
HaeII	RGCGCY	1 cut(s)	267
HhaI	GCGC	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	137, 242
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	2 cut(s)	171, 258
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	206, 365
HpyF10VI	GCNNNNNNNGC	5 cut(s)	347, 362, 371, 377, 380
HpyF3I	CTNAG	2 cut(s)	240, 309
HpySE526I	ACGT	1 cut(s)	280
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	133, 291
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	6 cut(s)	53, 122, 144, 227, 366, 372
Lsp1109I	GCAGC	5 cut(s)	328, 355, 358, 367, 377
LweI	GCATC	2 cut(s)	193, 328
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	135, 293
MboI	GATC	2 cut(s)	133, 291
MboII	GAAGA	3 cut(s)	29, 32, 351
MluCI	AATT	3 cut(s)	187, 224, 231
MnlI	CCTC	4 cut(s)	145, 304, 307, 332
MseI	TTAA	4 cut(s)	104, 174, 210, 394
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	368, 386
MwoI	GCNNNNNNNGC	5 cut(s)	347, 362, 371, 377, 380
NdeII	GATC	2 cut(s)	133, 291
NlaIV	GGNNCC	1 cut(s)	301
OliI	CACNNNNGTG	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	6 cut(s)	343, 367, 370, 373, 382, 385
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	104, 174, 210, 394
SatI	GCNGC	6 cut(s)	342, 366, 369, 372, 381, 384
Sau3AI	GATC	2 cut(s)	133, 291
Sau96I	GGNCC	1 cut(s)	154
SetI	ASST	7 cut(s)	124, 133, 159, 283, 318, 330, 370
SfaNI	GCATC	2 cut(s)	193, 328
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	187, 224, 231
SsiI	CCGC	2 cut(s)	374, 384
SspMI	CTAG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	171, 258
TaiI	ACGT	1 cut(s)	283
TasI	AATT	3 cut(s)	187, 224, 231
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	4 cut(s)	104, 174, 210, 394
Tru9I	TTAA	4 cut(s)	104, 174, 210, 394
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	5 cut(s)	341, 365, 368, 371, 380
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	154
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.