Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035601.1

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Reverse (-)

118 .. 955

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgtacgaaaaacaactagatagtggaaggggaactcttcttcacttgtgtgatgatgtgattcaacaggaagatctggacaagtggtgtgaggacctaatcaaagaacagtttaacgacgatatcaattttgatgtggacgatgcagttaagaagttagagaaattgggaattgttactcgggatacccttggacggtatagcgctgttgggctgaaacgtgctaacgagatcattggcaccaccactgaggaggttgtcctcaaggtaaaacaagatgctgctaatgctcctgcttcttctgcagctgctgcggttgctgccgctggttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3754

Protein Analysis

111

Amino Acids

12.13

Weight (kDa)

4.52

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	2 cut(s)	314, 324
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	205
ApeKI	GCWGC	5 cut(s)	281, 305, 308, 311, 320
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	239
BbvI	GCAGC	5 cut(s)	268, 295, 298, 307, 317
BciVI	GTATCC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	178
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	6 cut(s)	282, 306, 309, 312, 321, 324
BlsI	GCNGC	6 cut(s)	283, 307, 310, 313, 322, 325
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	2 cut(s)	133, 268
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	5 cut(s)	268, 295, 298, 307, 317
BshNI	GGYRCC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	73, 231
BspACI	CCGC	2 cut(s)	314, 324
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	73, 231
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	111, 198
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	2 cut(s)	76, 234
BstMBI	GATC	2 cut(s)	73, 231
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 302, 311, 317, 320
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	5 cut(s)	268, 295, 298, 307, 317
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	311
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	2 cut(s)	214, 308
CviKI_1	RGCY	2 cut(s)	214, 308
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	75, 233
DpnII	GATC	2 cut(s)	73, 231
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	94
Eco47III	AGCGCT	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaiI	YATR	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	282, 306, 309, 312, 321, 324
Fsp4HI	GCNGC	6 cut(s)	282, 306, 309, 312, 321, 324
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	6 cut(s)	282, 306, 309, 312, 321, 324
HaeII	RGCGCY	1 cut(s)	207
HhaI	GCGC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	77, 182
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	2 cut(s)	111, 198
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	146, 305
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 302, 311, 317, 320
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	220
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	73, 231
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	4 cut(s)	53, 62, 306, 312
Lsp1109I	GCAGC	5 cut(s)	268, 295, 298, 307, 317
LweI	GCATC	2 cut(s)	133, 268
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	75, 233
MboI	GATC	2 cut(s)	73, 231
MboII	GAAGA	4 cut(s)	29, 32, 83, 291
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	127, 164, 171
MnlI	CCTC	4 cut(s)	85, 244, 247, 272
MseI	TTAA	3 cut(s)	114, 150, 334
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	308, 326
MwoI	GCNNNNNNNGC	5 cut(s)	287, 302, 311, 317, 320
NdeII	GATC	2 cut(s)	73, 231
NlaIV	GGNNCC	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	6 cut(s)	283, 307, 310, 313, 322, 325
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	94
PspPPI	RGGWCCY	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	114, 150, 334
SatI	GCNGC	6 cut(s)	282, 306, 309, 312, 321, 324
Sau3AI	GATC	2 cut(s)	73, 231
Sau96I	GGNCC	1 cut(s)	94
SetI	ASST	5 cut(s)	99, 223, 258, 270, 310
SfaNI	GCATC	2 cut(s)	133, 268
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	127, 164, 171
SsiI	CCGC	2 cut(s)	314, 324
SspMI	CTAG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	111, 198
TaiI	ACGT	1 cut(s)	223
TasI	AATT	3 cut(s)	127, 164, 171
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	3 cut(s)	114, 150, 334
Tru9I	TTAA	3 cut(s)	114, 150, 334
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	5 cut(s)	281, 305, 308, 311, 320
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	94
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.