Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Forward (+)

20662360 .. 20664829

Gene Structure 2470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGTGCATCATTGTCGATTTCGAGCAAATTCATCAGAGAGGAAGAAGGGAGAAAAGAAGAGGAGGGGGACGGGAAGCTCTCAGGGAAATCATCAGCCCGGGCAGTCCAACCCGAAGTTGTTGGTGGCCGTCCAGCAGGTGTGGAGTTTTCTGCAGAGATTCATGACTTTGTAGTTGAGGATAAAGCCAAGTTGTACCCTTCTGTTAAAGATGATGTATCCATTACTATAATAGAAGCAAGCTCTCATATTTTGGACATCCGAGTAAGGCATATACATTTCTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

96

Amino Acids

10.52

Weight (kDa)

5.52

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	197
AluBI	AGCT	2 cut(s)	79, 243
AluI	AGCT	2 cut(s)	79, 243
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	29
AsuC2I	CCSGG	2 cut(s)	100, 101
AvaI	CYCGRG	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	229
BcnI	CCSGG	2 cut(s)	100, 101
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	100, 101
BmeT110I	CYCGRG	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	100, 101
BmsI	GCATC	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	100, 101
BsaJI	CCNNGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	99
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	258
BstSCI	CCNGG	2 cut(s)	98, 99
BstSFI	CTRYAG	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	163
Cfr9I	CCCGGG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	5 cut(s)	79, 98, 129, 188, 243
CviKI_1	RGCY	5 cut(s)	79, 98, 129, 188, 243
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	99
FaeI	CATG	1 cut(s)	167
FaiI	YATR	5 cut(s)	165, 230, 249, 273, 275
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	1 cut(s)	163
FokI	GGATG	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	38, 263
Hpy188III	TCNNGA	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	41, 210
HpyCH4V	TGCA	2 cut(s)	8, 155
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	167
LpnPI	CCDG	4 cut(s)	69, 113, 123, 147
LweI	GCATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	56, 71
MluCI	AATT	2 cut(s)	29, 286
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	4 cut(s)	34, 55, 58, 172
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	100, 101
NciI	CCSGG	2 cut(s)	100, 101
NlaIII	CATG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	163
PaqCI	CACCTGC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	100, 101
SetI	ASST	3 cut(s)	81, 142, 245
SfaNI	GCATC	1 cut(s)	17
SfcI	CTRYAG	1 cut(s)	153
SmaI	CCCGGG	1 cut(s)	101
SrfI	GCCCGGGC	1 cut(s)	101
Sse9I	AATT	2 cut(s)	29, 286
StyD4I	CCNGG	2 cut(s)	98, 99
TaqI	TCGA	2 cut(s)	17, 23
TasI	AATT	2 cut(s)	29, 286
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TspDTI	ATGAA	2 cut(s)	22, 152
TspMI	CCCGGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	29
XmaI	CCCGGG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.