Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000718

Physical Location & Seq

Genomic Coordinates Reverse (-)

84722608 .. 84727784

Gene Structure 5177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53849

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGTGCATCATTGTCGATTTCGAGCAAATTCATCAGGGACAGAGAGAGAGAGAGAGAGGAAGAAGAGGAGGGGGACGGGAAGCTCTCAGGGAAATCATCAGCCCGGGCAGTCCAACCCGAAGTTGTTGGTGGCCGGCCAGCAGGCGTGGTGTTTTCGGCAGAGATTCATGACTTTGTAGTTGAGGATAAAGCCAAGTTGTACCCTTCTGTTAAAGATGGTGTATCCATTACTATAATAGAAGCAAGCTCTCATATTTTGGACATGCGAGTAAGGCATATACATTTCTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

98

Amino Acids

10.83

Weight (kDa)

5.78

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19340
fragaria_vesca	FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g50540 FvH4_6g54351 FvH4_6g54352
malus_domestica	MD09G1002100.v1.1 MD09G1035500.v1.1 MD17G1006300.v1.1
prunus_persica	Prupe.3G282800_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1 Prupe.3G314100_v2.0.a1
pyrus_communis	pycom111g02830 pycom17g00180
rosa_chinensis	RchiOBHm_Chr2g0171021 RchiOBHm_Chr2g0171051 RchiOBHm_Chr2g0176571 RchiOBHm_Chr2g0176581 RchiOBHm_Chr2g0176591 RchiOBHm_Chr4g0402101
rosa_laevigata	RLG00000019532 RLG00000021999 RLG00000022426 RLG00000022427 RLG00000030813 RLG00000034042
rosa_multiflora	Rmu_co8282945.1_g000001 Rmu_sc0001417.1_g000012 Rmu_sc0001782.1_g000018 Rmu_sc0003517.1_g000001 Rmu_sc0007623.1_g000005 Rmu_sc0035601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025090 Rroxscaffold_2G00076280 Rroxscaffold_2G00076290 Rroxscaffold_2G00080870 Rroxscaffold_2G00080890 Rroxscaffold_2G00133310 Rroxscaffold_5G00340280
rosa_rugosa	Rorug02G0552900 Rorug02G0553300 Rorug02G0596200 Rorug05G0287200
rosa_samantha	Rh2AG625400 Rh2AG626600 Rh2AG626800 Rh2AG674200 Rh2AG674300 Rh2BG636700 Rh2BG685400 Rh2CG604900 Rh2CG605700 Rh2CG648400 Rh2CG648500 Rh2CG648600 Rh2DG390600 Rh2DG648400 Rh2DG699300 Rh2DG699400 Rh2DG699500 Rh3AG109000 Rh4DG067200 Rh5AG358400 Rh6CG152900 Rh6CG159900 Rh7AG305100
rosa_wichuraiana	Rw2G029960 Rw2G051860 Rw2G051880 Rw2G055300 Rw2G055310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	133, 137
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	203
AluBI	AGCT	2 cut(s)	85, 249
AluI	AGCT	2 cut(s)	85, 249
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	133, 137
ApoI	RAATTY	1 cut(s)	29
AsuC2I	CCSGG	2 cut(s)	106, 107
AvaI	CYCGRG	1 cut(s)	105
BccI	CCATC	1 cut(s)	212
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	235
BcnI	CCSGG	2 cut(s)	106, 107
BfuI	GTATCC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	106, 107
BmeT110I	CYCGRG	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	106, 107
BmsI	GCATC	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	106, 107
BsaJI	CCNNGG	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	135, 139
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	106, 136
BslFI	GGGAC	2 cut(s)	53, 89
BsmFI	GGGAC	2 cut(s)	53, 89
BsnI	GGCC	2 cut(s)	135, 139
BsoBI	CYCGRG	1 cut(s)	105
BspANI	GGCC	2 cut(s)	135, 139
BspCNI	CTCAG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	4 cut(s)	137, 141, 145, 247
BstDEI	CTNAG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	104, 105
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	135, 139
Cac8I	GCNNGC	4 cut(s)	137, 141, 145, 247
CciI	TCATGA	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	135
Cfr9I	CCCGGG	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	2 cut(s)	170, 265
CviJI	RGCY	6 cut(s)	85, 104, 135, 139, 194, 249
CviKI_1	RGCY	6 cut(s)	85, 104, 135, 139, 194, 249
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	88
EaeI	YGGCCR	2 cut(s)	133, 137
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	105
FaeI	CATG	2 cut(s)	173, 268
FaiI	YATR	6 cut(s)	171, 236, 255, 266, 279, 281
FaqI	GGGAC	2 cut(s)	53, 89
FatI	CATG	2 cut(s)	169, 264
FseI	GGCCGGCC	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	135, 139
HapII	CCGG	2 cut(s)	106, 136
Hin1II	CATG	2 cut(s)	173, 268
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	2 cut(s)	106, 136
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	173, 268
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
LpnPI	CCDG	6 cut(s)	22, 75, 119, 129, 149, 153
LweI	GCATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	74, 77
MluCI	AATT	2 cut(s)	29, 292
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	52, 61, 64, 178
MroNI	GCCGGC	1 cut(s)	135
MseI	TTAA	1 cut(s)	213
MspI	CCGG	2 cut(s)	106, 136
MspR9I	CCNGG	2 cut(s)	106, 107
MwoI	GCNNNNNNNGC	1 cut(s)	274
NaeI	GCCGGC	1 cut(s)	137
NciI	CCSGG	2 cut(s)	106, 107
NgoMIV	GCCGGC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	173, 268
NspI	RCATGY	1 cut(s)	268
PagI	TCATGA	1 cut(s)	169
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	166
RigI	GGCCGGCC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	106, 107
SetI	ASST	2 cut(s)	87, 251
SfaNI	GCATC	1 cut(s)	17
SmaI	CCCGGG	1 cut(s)	107
SrfI	GCCCGGGC	1 cut(s)	107
Sse9I	AATT	2 cut(s)	29, 292
StyD4I	CCNGG	2 cut(s)	104, 105
TaqI	TCGA	2 cut(s)	17, 23
TasI	AATT	2 cut(s)	29, 292
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	22, 158
TspMI	CCCGGG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	268
XmaI	CCCGGG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.