Rroxscaffold_5G00340280

Protein of unknown function (DUF3754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000718
Physical Location & Seq
Forward (+)
8752868 .. 8755963
3096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340280.1

Sequence Viewer

Length: 276 bp
ATGATTCAGGCTTCGTATCTTCTACAATTCGAGGATTTGATGCAACTGTATTCGCTCTTTGACCCCGTACATGGGAATCAAAAATTGCAACAACAAAGTCTTTCTTCTAGAGAAATTGATATACTGGAACAAAATTTCCTCATGTACTTATTTCAGGTGATGGAAAAGAGTAATTTCAAGATTGCAACTGATGAAGAAATTGAGATTGCGCATTTGGGGCAGTATTTTCTAAGTCTTCCCATTGTGGTTGATGAATCTAAGCTTGATGGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3754

Protein Analysis

91

Amino Acids

10.6

Weight (kDa)

4.29

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 210
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 2 cut(s) 69, 146
AfiI CCNNNNNNNGG 2 cut(s) 71, 72
AgsI TTSAA 1 cut(s) 178
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 2 cut(s) 262, 273
AluI AGCT 2 cut(s) 262, 273
ApeKI GCWGC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 133
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 227
BccI CCATC 2 cut(s) 154, 260
BfaI CTAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
BmsI GCATC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 72
Bse1I ACTGG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 71, 72
BseNI ACTGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 71, 72
BsrI ACTGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 230, 258
BstHHI GCGC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 227
CfoI GCGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 68, 145
CviAII CATG 2 cut(s) 71, 142
CviJI RGCY 3 cut(s) 11, 262, 273
CviKI_1 RGCY 3 cut(s) 11, 262, 273
CviQI GTAC 2 cut(s) 68, 145
DdeI CTNAG 2 cut(s) 230, 258
FaeI CATG 2 cut(s) 74, 145
FaiI YATR 3 cut(s) 72, 122, 143
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FatI CATG 2 cut(s) 70, 141
Fnu4HI GCNGC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 1 cut(s) 108
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 271
HhaI GCGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 74, 145
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 3 cut(s) 4, 76, 254
HphI GGTGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 108, 178
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 43, 88, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 2 cut(s) 230, 258
Hsp92II CATG 2 cut(s) 74, 145
HspAI GCGC 1 cut(s) 209
LpnPI CCDG 2 cut(s) 110, 140
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 108
MboII GAAGA 4 cut(s) 11, 96, 206, 227
MluCI AATT 6 cut(s) 26, 83, 114, 133, 172, 198
MnlI CCTC 2 cut(s) 25, 149
MspA1I CMGCKG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 217
NlaIII CATG 2 cut(s) 74, 145
NsbI TGCGCA 1 cut(s) 210
PfeI GAWTC 3 cut(s) 4, 76, 254
PkrI GCNGC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 273
RsaI GTAC 2 cut(s) 69, 146
RsaNI GTAC 2 cut(s) 68, 145
SatI GCNGC 1 cut(s) 271
SetI ASST 3 cut(s) 159, 264, 275
SfaNI GCATC 1 cut(s) 30
SgeI CNNG 9 cut(s) 20, 43, 77, 83, 120, 137, 154, 167, 190
Sse9I AATT 6 cut(s) 26, 83, 114, 133, 172, 198
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 30
TasI AATT 6 cut(s) 26, 83, 114, 133, 172, 198
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 3 cut(s) 4, 76, 254
TseI GCWGC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 207, 267
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 107
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.