Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

9199972 .. 9201643

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGACCACGTTATTCCTCCTTATTGCTCTATTCATCACAACCATCCTCAACCCAACAAGTGGAGAATCAGTAGGTGTATGCTATGGAATGATGGGGAACAACCTTCCTTCTCAATCAGACACAATCGCTCTCTTTAGACAAAACAACATCCGACGTGTTAGACTCTACGATCCAAACCAAGCCGCTTTAAACGCTCTTAGAAACACGGGTATCGAAGTCATCATCGGCGTTCCAAACACCGATCTTCGTTCACTCACTAACCCTTCTTCCGCTAGATCATGGCTCCAAAACAACGTCCTCAACTATTACCCCGCCGTTAGCTTCAAGTACATCGCCGTAGGTAACGAAGTATCTCCGTCGAACGGCGGTGATGTTGTGCTCCCTGCCATGCGTAACGTTTACGATGCTCTAAGAGGTGCAAATCTTCAAGATCGTATTAAAGTTTCTACCGCCATTGATATGACTTTGATTGGAAACTCTTTCCCTCCTTCCTCCGGAGAGTTTCGTGGTGACGTTAGATGGTATATCGATCCCGTCATCGGGTTTCTTACGAGTACGAACTCAGCGTTACTAGCCAACATCTATCCTTACTTCAGCTACGTTGACAATCCACGTGACATATCTCTCTCTTACGCTCTCTTCACTTCTCCTTCCGTCGTCGTATGGGACGGCTCTCGTGGCTACCAAAACCTCTTTGACGCTTTACTTGACGTTGTTTACTCTGCCGTTGAACGCTCAGGCGGTGGATCTCTCCCAGTGGTTGTTTCCGAGAGCGGATGGCCTTCTAACGGTGGAAACGCCGCGAGTTTCGATAACGCGCGAGCTTTTTACACGAATCTTGCGTCGCGTGTGAGAGAGAACAGAGGAACACCGAAGAGACCTGGAAGAGGAGTGGAAACGTATTTGTTCGCTATGTTTGATGAGAATCAAAAGAGTCCTGAGATCGAGAAGAATTTTGGTTTGTTTTTTCCTAATAAACAACCAAAATTTCCGATCACATTCTCTGCCGCGAGAGACGGTACGGCGGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002215 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0008810 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009817 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

344

Amino Acids

37.71

Weight (kDa)

6.42

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	24 - 334	6.2e-114	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	774
AccII	CGCG	5 cut(s)	803, 818, 820, 847, 1010
AccIII	TCCGGA	1 cut(s)	494
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	3 cut(s)	164, 524, 754
AcsI	RAATTY	2 cut(s)	952, 986
AcuI	CTGAAG	1 cut(s)	577
AcvI	CACGTG	1 cut(s)	614
AfaI	GTAC	3 cut(s)	329, 556, 1021
AfiI	CCNNNNNNNGG	7 cut(s)	59, 362, 494, 539, 540, 788, 887
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	325, 428, 731
AjiI	CACGTC	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	3 cut(s)	321, 597, 824
AluI	AGCT	3 cut(s)	321, 597, 824
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	871, 1008
AlwI	GGATC	3 cut(s)	164, 524, 754
Aor13HI	TCCGGA	1 cut(s)	494
AoxI	GGCC	1 cut(s)	779
ApoI	RAATTY	2 cut(s)	952, 986
ArsI	GACNNNNNNTTYG	2 cut(s)	827, 859
AspLEI	GCGC	1 cut(s)	820
AsuHPI	GGTGA	2 cut(s)	380, 521
BaeI	ACNNNNGTAYC	3 cut(s)	193, 226, 1011
BauI	CACGAG	1 cut(s)	675
BbrPI	CACGTG	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	381
BccI	CCATC	4 cut(s)	50, 85, 513, 771
BceAI	ACGGC	5 cut(s)	299, 320, 379, 685, 710
BciT130I	CCWGG	1 cut(s)	882
BcoDI	GTCTC	2 cut(s)	871, 1008
BfaI	CTAG	2 cut(s)	273, 572
BisI	GCNGC	3 cut(s)	183, 801, 1008
BlsI	GCNGC	3 cut(s)	184, 802, 1009
Bme1390I	CCNGG	1 cut(s)	882
BmgBI	CACGTC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	882
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	528
BsaAI	YACGTR	1 cut(s)	614
BsaBI	GATNNNNATC	1 cut(s)	924
BsaI	GGTCTC	1 cut(s)	871
BsaWI	WCCGGW	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	7 cut(s)	59, 362, 494, 539, 540, 788, 887
Bse1I	ACTGG	1 cut(s)	755
Bse8I	GATNNNNATC	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	882
BseCI	ATCGAT	1 cut(s)	528
BseGI	GGATG	3 cut(s)	42, 147, 782
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	7 cut(s)	59, 362, 494, 539, 540, 788, 887
BseMII	CTCAG	3 cut(s)	576, 750, 930
BseNI	ACTGG	1 cut(s)	755
BseRI	GAGGAG	1 cut(s)	903
Bsh1236I	CGCG	5 cut(s)	803, 818, 820, 847, 1010
BshFI	GGCC	1 cut(s)	781
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	7 cut(s)	59, 362, 494, 539, 540, 788, 887
BsmAI	GTCTC	2 cut(s)	871, 1008
BsmBI	CGTCTC	1 cut(s)	1008
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	1 cut(s)	781
Bso31I	GGTCTC	1 cut(s)	871
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	494
Bsp143I	GATC	8 cut(s)	169, 241, 275, 430, 529, 746, 942, 993
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	3 cut(s)	575, 749, 931
BspDI	ATCGAT	1 cut(s)	528
BspEI	TCCGGA	1 cut(s)	494
BspFNI	CGCG	5 cut(s)	803, 818, 820, 847, 1010
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	3 cut(s)	164, 524, 754
BspTNI	GGTCTC	1 cut(s)	871
BsrBI	CCGCTC	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	755
BssMI	GATC	8 cut(s)	169, 241, 275, 430, 529, 746, 942, 993
BssSI	CACGAG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	2 cut(s)	791, 1019
Bst6I	CTCTTC	3 cut(s)	644, 869, 880
BstBAI	YACGTR	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	5 cut(s)	197, 410, 562, 736, 939
BstENI	CCTNNNNNAGG	1 cut(s)	885
BstF5I	GGATG	3 cut(s)	42, 147, 782
BstFNI	CGCG	5 cut(s)	803, 818, 820, 847, 1010
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	8 cut(s)	172, 244, 278, 433, 532, 749, 945, 996
BstMAI	GTCTC	2 cut(s)	871, 1008
BstMBI	GATC	8 cut(s)	169, 241, 275, 430, 529, 746, 942, 993
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 572, 678
BstNI	CCWGG	1 cut(s)	882
BstSCI	CCNGG	1 cut(s)	880
BstUI	CGCG	5 cut(s)	803, 818, 820, 847, 1010
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	781
BsuTUI	ATCGAT	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	316
BtrI	CACGTC	1 cut(s)	155
BtsCI	GGATG	3 cut(s)	42, 147, 782
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	1 cut(s)	822
CfoI	GCGC	1 cut(s)	820
ClaI	ATCGAT	1 cut(s)	528
CseI	GACGC	2 cut(s)	707, 831
Csp6I	GTAC	3 cut(s)	328, 555, 1020
CviAII	CATG	2 cut(s)	279, 388
CviJI	RGCY	9 cut(s)	182, 283, 321, 575, 597, 672, 681, 781, 824
CviKI_1	RGCY	9 cut(s)	182, 283, 321, 575, 597, 672, 681, 781, 824
CviQI	GTAC	3 cut(s)	328, 555, 1020
DdeI	CTNAG	5 cut(s)	197, 410, 562, 736, 939
DpnI	GATC	8 cut(s)	171, 243, 277, 432, 531, 748, 944, 995
DpnII	GATC	8 cut(s)	169, 241, 275, 430, 529, 746, 942, 993
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	3 cut(s)	644, 869, 880
EarI	CTCTTC	3 cut(s)	644, 869, 880
Eco31I	GGTCTC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	577
Eco72I	CACGTG	1 cut(s)	614
EcoNI	CCTNNNNNAGG	1 cut(s)	885
EcoRII	CCWGG	1 cut(s)	880
Esp3I	CGTCTC	1 cut(s)	1008
FaeI	CATG	2 cut(s)	282, 391
FaiI	YATR	9 cut(s)	79, 84, 280, 389, 461, 525, 620, 664, 914
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	2 cut(s)	278, 387
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	183, 801, 1008
FokI	GGATG	3 cut(s)	29, 134, 789
Fsp4HI	GCNGC	3 cut(s)	183, 801, 1008
FspBI	CTAG	2 cut(s)	273, 572
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	3 cut(s)	183, 801, 1008
HaeIII	GGCC	1 cut(s)	781
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	2 cut(s)	707, 831
HhaI	GCGC	1 cut(s)	820
Hin1II	CATG	2 cut(s)	282, 391
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	5 cut(s)	65, 162, 835, 925, 934
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	2 cut(s)	380, 521
Hpy166II	GTNNAC	4 cut(s)	251, 400, 604, 718
Hpy188I	TCNGA	4 cut(s)	118, 152, 769, 993
Hpy188III	TCNNGA	4 cut(s)	428, 495, 938, 946
Hpy8I	GTNNAC	4 cut(s)	251, 400, 604, 718
Hpy99I	CGWCG	5 cut(s)	156, 361, 659, 662, 847
HpyAV	CCTTC	6 cut(s)	113, 117, 273, 498, 660, 792
HpyCH4III	ACNGT	2 cut(s)	791, 1019
HpyCH4IV	ACGT	9 cut(s)	8, 154, 294, 396, 513, 600, 613, 711, 899
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 572, 678
HpyF3I	CTNAG	5 cut(s)	197, 410, 562, 736, 939
HpySE526I	ACGT	9 cut(s)	8, 154, 294, 396, 513, 600, 613, 711, 899
Hsp92II	CATG	2 cut(s)	282, 391
HspAI	GCGC	1 cut(s)	818
Kpn2I	TCCGGA	1 cut(s)	494
Kzo9I	GATC	8 cut(s)	169, 241, 275, 430, 529, 746, 942, 993
LmnI	GCTCC	2 cut(s)	288, 384
LpnPI	CCDG	7 cut(s)	396, 508, 723, 768, 867, 894, 951
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	273, 572
MaeII	ACGT	9 cut(s)	8, 154, 294, 396, 513, 600, 613, 711, 899
MaeIII	GTNAC	5 cut(s)	341, 392, 509, 567, 614
MalI	GATC	8 cut(s)	171, 243, 277, 432, 531, 748, 944, 995
MbiI	CCGCTC	1 cut(s)	774
MboI	GATC	8 cut(s)	169, 241, 275, 430, 529, 746, 942, 993
MboII	GAAGA	7 cut(s)	236, 258, 416, 631, 886, 897, 961
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	952, 986
MlyI	GAGTC	2 cut(s)	156, 943
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	9 cut(s)	26, 56, 308, 407, 495, 502, 701, 857, 881
MroI	TCCGGA	1 cut(s)	494
MseI	TTAA	2 cut(s)	188, 438
MslI	CAYNNNNRTG	1 cut(s)	458
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	882
MvnI	CGCG	5 cut(s)	803, 818, 820, 847, 1010
MwoI	GCNNNNNNNGC	3 cut(s)	191, 572, 678
NdeII	GATC	8 cut(s)	169, 241, 275, 430, 529, 746, 942, 993
NlaIII	CATG	2 cut(s)	282, 391
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	2 cut(s)	509, 614
PcsI	WCGNNNNNNNCGW	2 cut(s)	563, 839
PfeI	GAWTC	3 cut(s)	65, 835, 925
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	184, 802, 1009
PleI	GAGTC	2 cut(s)	156, 942
PmaCI	CACGTG	1 cut(s)	614
PmlI	CACGTG	1 cut(s)	614
PpsI	GAGTC	2 cut(s)	156, 942
Ppu21I	YACGTR	1 cut(s)	614
Psp1406I	AACGTT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	880
PspCI	CACGTG	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	746
RsaI	GTAC	3 cut(s)	329, 556, 1021
RsaNI	GTAC	3 cut(s)	328, 555, 1020
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	188, 438
SatI	GCNGC	3 cut(s)	183, 801, 1008
Sau3AI	GATC	8 cut(s)	169, 241, 275, 430, 529, 746, 942, 993
SchI	GAGTC	2 cut(s)	156, 943
ScrFI	CCNGG	1 cut(s)	882
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	952, 986
SspMI	CTAG	2 cut(s)	273, 572
StyD4I	CCNGG	1 cut(s)	880
TaaI	ACNGT	2 cut(s)	791, 1019
TaiI	ACGT	9 cut(s)	11, 157, 297, 399, 516, 603, 616, 714, 902
TaqI	TCGA	5 cut(s)	213, 359, 528, 810, 945
TasI	AATT	2 cut(s)	952, 986
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	3 cut(s)	185, 803, 1010
TfiI	GAWTC	3 cut(s)	65, 835, 925
Tru1I	TTAA	2 cut(s)	188, 438
Tru9I	TTAA	2 cut(s)	188, 438
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	2 cut(s)	509, 614
Tsp45I	GTSAC	2 cut(s)	509, 614
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	2 cut(s)	345, 643
TspRI	CASTG	1 cut(s)	762
Van91I	CCANNNNNTGG	1 cut(s)	59
XagI	CCTNNNNNAGG	1 cut(s)	885
XapI	RAATTY	2 cut(s)	952, 986
XspI	CTAG	2 cut(s)	273, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.