Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303623.1

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

461 .. 892

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303623.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtacccatactttagtttcattcaaaaccgagcaaacattgaccttcgatatgctctttttacatctccgtcagtcgtggttcaagatggacaatctggctatcaaaatctgtttgatgcacttcttgatgcacattactccgctttagagaaggctgggggtggttctttgagaattgttgtatcggagactggttggccctctgctggtggtgatggtcaagtgacaacaaaggagaatgcgagaatttacaactcaaatgtgatcaagcatgtcaagggcggtactccaaagagacctggaggttccatagaaacttacatatttgccatgttcaatgagaatcaaaaacctggagacgagactgagaaaaatttcggcctcttttacccaagcaaaaatccggtttatcccatcaatttcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

143

Amino Acids

15.81

Weight (kDa)

6.72

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	144, 285
AcsI	RAATTY	2 cut(s)	249, 376
AfaI	GTAC	2 cut(s)	5, 289
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	4 cut(s)	26, 86, 340, 427
AjnI	CCWGG	2 cut(s)	301, 355
Alw26I	GTCTC	4 cut(s)	185, 292, 354, 359
AoxI	GGCC	2 cut(s)	200, 382
ApoI	RAATTY	2 cut(s)	249, 376
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	227
BccI	CCATC	3 cut(s)	83, 212, 425
BciT130I	CCWGG	2 cut(s)	303, 357
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	4 cut(s)	185, 292, 354, 359
Bme1390I	CCNGG	2 cut(s)	303, 357
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	303, 357
BmsI	GCATC	2 cut(s)	109, 121
BpmI	CTGGAG	2 cut(s)	324, 378
BsaI	GGTCTC	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	303, 357
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	2 cut(s)	202, 384
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	4 cut(s)	185, 292, 354, 359
BsmBI	CGTCTC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	202, 384
Bso31I	GGTCTC	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	144, 285
BspANI	GGCC	2 cut(s)	202, 384
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	310
BspTNI	GGTCTC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	303, 357
BstDEI	CTNAG	1 cut(s)	369
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	4 cut(s)	185, 292, 354, 359
BstMBI	GATC	1 cut(s)	267
BstNI	CCWGG	2 cut(s)	303, 357
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	301, 355
BsuRI	GGCC	2 cut(s)	202, 384
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	4, 288
CviAII	CATG	2 cut(s)	275, 334
CviJI	RGCY	4 cut(s)	102, 158, 202, 384
CviKI_1	RGCY	4 cut(s)	102, 158, 202, 384
CviQI	GTAC	2 cut(s)	4, 288
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	301, 355
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	2 cut(s)	278, 337
FaiI	YATR	6 cut(s)	10, 54, 276, 314, 326, 335
FatI	CATG	2 cut(s)	274, 333
FbaI	TGATCA	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	2 cut(s)	324, 378
HaeIII	GGCC	2 cut(s)	202, 384
HapII	CCGG	1 cut(s)	407
Hin1II	CATG	2 cut(s)	278, 337
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	86, 128
HpyAV	CCTTC	2 cut(s)	56, 148
HpyCH4V	TGCA	2 cut(s)	122, 134
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	278, 337
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	267
LpnPI	CCDG	9 cut(s)	84, 144, 180, 195, 288, 315, 342, 369, 420
LweI	GCATC	2 cut(s)	109, 121
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MluCI	AATT	4 cut(s)	177, 249, 376, 421
MnlI	CCTC	3 cut(s)	214, 299, 395
MroXI	GAANNNNTTC	1 cut(s)	377
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	303, 357
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	2 cut(s)	303, 357
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	278, 337
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	278
PctI	GAATGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	301, 355
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	2 cut(s)	301, 355
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	201
RsaI	GTAC	2 cut(s)	5, 289
RsaNI	GTAC	2 cut(s)	4, 288
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	303, 357
SetI	ASST	4 cut(s)	48, 304, 310, 358
SfaNI	GCATC	2 cut(s)	109, 121
Sse9I	AATT	4 cut(s)	177, 249, 376, 421
SsiI	CCGC	2 cut(s)	144, 285
StyD4I	CCNGG	2 cut(s)	301, 355
TaqI	TCGA	1 cut(s)	49
TasI	AATT	4 cut(s)	177, 249, 376, 421
TfiI	GAWTC	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	60
XapI	RAATTY	2 cut(s)	249, 376
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.