Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

10275082 .. 10276646

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1084100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTAAGTCCCATTTAGTTGCGAAAAGCCCCTCCAGGGTTTCCATTCTGCTACTTCTCGGACTGCTAATGGCTACCCTTACTACAACTGGTGCACAAATTGGTGTTTGTTACGGAACGGTTGCAAACAACTTGCCACCCGCACAAGAAGTGATATCTCTTTACAACCAGTACAATATTCAAAGAATGCGGCTCTATGGTCCCAACCACGATGCTCTCCAAGCCCTCAGAGGCTCTAACATTGAGGTCGTGCTTGGTGTAGAAAACGAACGCCTTCAAGACATTTCTTCTAGTCAGGACAGTGCAAATGATTGGGTCCAAAATAATGTTGTAAACTACAACGATGTCAAATTTAAGTATATTGCAGTCGGAAATGAAATAAATGCCACAGGTCCAGATGCGCCATTTGTTGGCCCTGCAATGGAAAGAATTCAAAATGCTATTTCTACGGCAGGGCTTGCAAACCAAATTAAGGTCTCTACCGCAGTTTACCCTATAATCCTCGAAGAATCGTACCCTCCATCAAAAGGTTCCTTCAGACAAAACTATCGGCCATTTCTTGATCCAATCATCGGGTTCTTAGTTGGGAATCAATCTCCGTTACTTGTTAATATGTACCCGTATTTTAGTTACATTCAAAGTCGTGACATTAGTCTTGAATATGCTCTTTTTACATCCCCATCCGCTCCAGTGAATGATGGTGATCTTCAGTATCAGAACCTATTTGATGCAATTCTGGATGCAGTTTACTCAGCGTTAGAGAAGGCTGAAGGTGGCTCTTTGAAAATTGTTGTATCAGAGAGTGGTTGGCCCTCAGACGGTGGGGATGGTCAAGTGACAACGAAGGAGAATGCAAGAATTTACAACTCAAATTTGATAAAGCATGTGAAGGGCGGGACTCCAAAGAAGCCTGGAAACCCCATCGAAACTTACGTGTTTAGCATGTTTAATGAGAATGAAAAACAAGGGGAGGCGACCGAGAAGCATTTCGGGCTCTTTTTTCCTAACAAAGAGCCCGTATATCCCATTGATTTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

347

Amino Acids

38.03

Weight (kDa)

5.13

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	34 - 345	1.7e-113	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccBSI	CCGCTC	1 cut(s)	686
AciI	CCGC	5 cut(s)	141, 190, 483, 684, 894
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	4 cut(s)	350, 429, 858, 871
AcuI	CTGAAG	3 cut(s)	520, 692, 789
AfaI	GTAC	3 cut(s)	173, 515, 617
AfiI	CCNNNNNNNGG	7 cut(s)	37, 410, 421, 472, 527, 572, 818
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	7 cut(s)	182, 278, 434, 638, 659, 784, 1036
AjnI	CCWGG	2 cut(s)	35, 910
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	481
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	3 cut(s)	412, 551, 809
ApaLI	GTGCAC	1 cut(s)	93
ApoI	RAATTY	4 cut(s)	350, 429, 858, 871
Asp700I	GAANNNNTTC	3 cut(s)	273, 429, 986
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	5 cut(s)	200, 316, 392, 413, 810
AsuHPI	GGTGA	1 cut(s)	713
AvaII	GGWCC	3 cut(s)	200, 316, 392
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	996, 1017
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	5 cut(s)	529, 688, 692, 821, 929
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	2 cut(s)	37, 912
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	2 cut(s)	291, 1039
BisI	GCNGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	192
Bme1390I	CCNGG	2 cut(s)	37, 912
Bme18I	GGWCC	3 cut(s)	200, 316, 392
BmgT120I	GGNCC	5 cut(s)	200, 316, 392, 413, 810
BmiI	GGNNCC	3 cut(s)	202, 317, 532
BmrFI	CCNGG	2 cut(s)	37, 912
BmsI	GCATC	4 cut(s)	202, 388, 718, 730
BoxI	GACNNNNGTC	1 cut(s)	651
BpmI	CTGGAG	2 cut(s)	19, 672
BsaAI	YACGTR	1 cut(s)	934
BsaBI	GATNNNNATC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 410, 421, 472, 527, 572, 818
Bse1I	ACTGG	3 cut(s)	94, 169, 689
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	2 cut(s)	37, 912
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	4 cut(s)	674, 680, 745, 832
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	7 cut(s)	37, 410, 421, 472, 527, 572, 818
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	241, 765, 828
BseNI	ACTGG	3 cut(s)	94, 169, 689
BseSI	GKGCMC	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	978
BshFI	GGCC	3 cut(s)	414, 553, 811
BsiEI	CGRYCG	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	97
BslFI	GGGAC	2 cut(s)	186, 910
BslI	CCNNNNNNNGG	7 cut(s)	37, 410, 421, 472, 527, 572, 818
BsmAI	GTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	186, 910
BsmI	GAATGC	2 cut(s)	192, 856
BsnI	GGCC	3 cut(s)	414, 553, 811
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	3 cut(s)	97, 996, 1017
Bsp143I	GATC	2 cut(s)	562, 703
BspACI	CCGC	5 cut(s)	141, 190, 483, 684, 894
BspANI	GGCC	3 cut(s)	414, 553, 811
BspCNI	CTCAG	3 cut(s)	240, 764, 827
BspLI	GGNNCC	3 cut(s)	202, 317, 532
BspPI	GGATC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	94, 169, 689
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	562, 703
Bst2UI	CCWGG	2 cut(s)	37, 912
Bst4CI	ACNGT	3 cut(s)	121, 302, 821
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	934
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	5 cut(s)	6, 227, 580, 751, 814
BstF5I	GGATG	4 cut(s)	674, 680, 745, 832
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	2 cut(s)	565, 706
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	2 cut(s)	562, 703
BstMCI	CGRYCG	1 cut(s)	978
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 458, 991
BstNI	CCWGG	2 cut(s)	37, 912
BstNSI	RCATGY	2 cut(s)	887, 946
BstPAI	GACNNNNGTC	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	35, 910
BstSLI	GKGCMC	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	414, 553, 811
BtsCI	GGATG	4 cut(s)	674, 680, 745, 832
BtsIMutI	CAGTG	2 cut(s)	307, 696
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	5 cut(s)	200, 316, 392, 413, 810
Csp6I	GTAC	3 cut(s)	172, 514, 616
CviAII	CATG	2 cut(s)	884, 943
CviQI	GTAC	3 cut(s)	172, 514, 616
DdeI	CTNAG	5 cut(s)	6, 227, 580, 751, 814
DpnI	GATC	2 cut(s)	564, 705
DpnII	GATC	2 cut(s)	562, 703
EaeI	YGGCCR	1 cut(s)	551
Eco24I	GRGCYC	2 cut(s)	996, 1017
Eco31I	GGTCTC	1 cut(s)	481
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	3 cut(s)	200, 316, 392
Eco57I	CTGAAG	3 cut(s)	520, 692, 789
EcoRI	GAATTC	1 cut(s)	429
EcoRII	CCWGG	2 cut(s)	35, 910
EcoRV	GATATC	1 cut(s)	156
EcoT38I	GRGCYC	2 cut(s)	996, 1017
FaeI	CATG	2 cut(s)	887, 946
FaiI	YATR	8 cut(s)	198, 360, 497, 614, 663, 885, 944, 1021
FaqI	GGGAC	2 cut(s)	186, 910
FatI	CATG	2 cut(s)	883, 942
FauI	CCCGC	2 cut(s)	148, 887
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	4 cut(s)	661, 667, 752, 839
FriOI	GRGCYC	2 cut(s)	996, 1017
Fsp4HI	GCNGC	1 cut(s)	191
FspBI	CTAG	2 cut(s)	291, 1039
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	19, 672
HaeIII	GGCC	3 cut(s)	414, 553, 811
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	887, 946
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	3 cut(s)	509, 589, 898
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	4 cut(s)	95, 334, 490, 748
Hpy188I	TCNGA	7 cut(s)	62, 230, 371, 539, 717, 799, 817
Hpy188III	TCNNGA	7 cut(s)	278, 296, 395, 560, 644, 656, 737
Hpy8I	GTNNAC	4 cut(s)	95, 334, 490, 748
HpyAV	CCTTC	6 cut(s)	284, 544, 757, 764, 838, 883
HpyCH4III	ACNGT	3 cut(s)	121, 302, 821
HpyCH4IV	ACGT	1 cut(s)	933
HpyCH4V	TGCA	9 cut(s)	95, 125, 305, 365, 419, 461, 731, 743, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 458, 991
HpyF3I	CTNAG	5 cut(s)	6, 227, 580, 751, 814
HpySE526I	ACGT	1 cut(s)	933
Hsp92II	CATG	2 cut(s)	887, 946
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	562, 703
LmnI	GCTCC	1 cut(s)	691
LweI	GCATC	4 cut(s)	202, 388, 718, 730
MaeI	CTAG	2 cut(s)	291, 1039
MaeII	ACGT	1 cut(s)	933
MaeIII	GTNAC	5 cut(s)	110, 600, 629, 644, 835
MalI	GATC	2 cut(s)	564, 705
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	2 cut(s)	562, 703
MboII	GAAGA	3 cut(s)	279, 518, 698
MhlI	GDGCHC	3 cut(s)	97, 996, 1017
MluCI	AATT	8 cut(s)	99, 350, 429, 468, 732, 786, 858, 871
MlyI	GAGTC	1 cut(s)	892
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	8 cut(s)	43, 224, 236, 238, 512, 528, 823, 964
MroXI	GAANNNNTTC	3 cut(s)	273, 429, 986
MseI	TTAA	4 cut(s)	354, 471, 609, 948
MspR9I	CCNGG	2 cut(s)	37, 912
Mva1269I	GAATGC	2 cut(s)	192, 856
MvaI	CCWGG	2 cut(s)	37, 912
MwoI	GCNNNNNNNGC	3 cut(s)	221, 458, 991
NdeII	GATC	2 cut(s)	562, 703
NlaIII	CATG	2 cut(s)	887, 946
NlaIV	GGNNCC	3 cut(s)	202, 317, 532
NmuCI	GTSAC	2 cut(s)	644, 835
NspI	RCATGY	2 cut(s)	887, 946
PcsI	WCGNNNNNNNCGW	1 cut(s)	930
PctI	GAATGC	2 cut(s)	192, 856
PdmI	GAANNNNTTC	3 cut(s)	273, 429, 986
PfeI	GAWTC	2 cut(s)	509, 589
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	192
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
Ppu21I	YACGTR	1 cut(s)	934
PshAI	GACNNNNGTC	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	35, 910
PspGI	CCWGG	2 cut(s)	35, 910
PspN4I	GGNNCC	3 cut(s)	202, 317, 532
PspPI	GGNCC	5 cut(s)	200, 316, 392, 413, 810
RsaI	GTAC	3 cut(s)	173, 515, 617
RsaNI	GTAC	3 cut(s)	172, 514, 616
SaqAI	TTAA	4 cut(s)	354, 471, 609, 948
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	2 cut(s)	562, 703
Sau96I	GGNCC	5 cut(s)	200, 316, 392, 413, 810
SchI	GAGTC	1 cut(s)	892
ScrFI	CCNGG	2 cut(s)	37, 912
SduI	GDGCHC	3 cut(s)	97, 996, 1017
SetI	ASST	7 cut(s)	249, 394, 477, 532, 723, 775, 936
SfaNI	GCATC	4 cut(s)	202, 388, 718, 730
SinI	GGWCC	3 cut(s)	200, 316, 392
Sse9I	AATT	8 cut(s)	99, 350, 429, 468, 732, 786, 858, 871
SsiI	CCGC	5 cut(s)	141, 190, 483, 684, 894
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	291, 1039
StyD4I	CCNGG	2 cut(s)	35, 910
TaaI	ACNGT	3 cut(s)	121, 302, 821
TaiI	ACGT	1 cut(s)	936
TaqI	TCGA	2 cut(s)	504, 924
TaqII	GACCGA	1 cut(s)	992
TasI	AATT	8 cut(s)	99, 350, 429, 468, 732, 786, 858, 871
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	509, 589
Tru1I	TTAA	4 cut(s)	354, 471, 609, 948
Tru9I	TTAA	4 cut(s)	354, 471, 609, 948
TscAI	CASTG	2 cut(s)	307, 696
TseFI	GTSAC	2 cut(s)	644, 835
Tsp45I	GTSAC	2 cut(s)	644, 835
TspDTI	ATGAA	2 cut(s)	390, 972
TspGWI	ACGGA	2 cut(s)	129, 588
TspRI	CASTG	2 cut(s)	307, 696
Van91I	CCANNNNNTGG	1 cut(s)	410
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	3 cut(s)	200, 316, 392
XapI	RAATTY	4 cut(s)	350, 429, 858, 871
XceI	RCATGY	2 cut(s)	887, 946
XmnI	GAANNNNTTC	3 cut(s)	273, 429, 986
XspI	CTAG	2 cut(s)	291, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.