Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

923830 .. 924096

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTCTTTTTACATATCCATCGGTTTTGGTTCAAGATGGCCAGCATGGCTATCAAAACTTGTTTGATGCAATTCTTGATGCACATGCATTACTCTGCTTTAGAGAAGGCCGGGGACAGTTCTTTGACAATTGTTGTATCAGAGACTGGTTGGCCCTCCGCTGGTGGTGATGGCCAAGTGACAACAAAGGAGAATGCGAGAATTTACAACTCAAATGTGGTCAAGCATGTCAAGCGTGGTACTCCGAAGAAGCCTGAGTTCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

88

Amino Acids

9.97

Weight (kDa)

9.67

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	20 - 86	5.7e-16	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	159
AcoI	YGGCCR	2 cut(s)	39, 172
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	4 cut(s)	39, 108, 152, 172
ApoI	RAATTY	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	179
BalI	TGGCCA	2 cut(s)	41, 174
BccI	CCATC	3 cut(s)	27, 31, 164
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	57, 69
BpuMI	CCSGG	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	151
BshFI	GGCC	4 cut(s)	41, 110, 154, 174
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	4 cut(s)	41, 110, 154, 174
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	4 cut(s)	41, 110, 154, 174
BspCNI	CTCAG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 232
BstNSI	RCATGY	2 cut(s)	88, 230
BstSCI	CCNGG	1 cut(s)	110
BsuRI	GGCC	4 cut(s)	41, 110, 154, 174
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	3 cut(s)	46, 85, 227
CviJI	RGCY	6 cut(s)	41, 50, 110, 154, 174, 253
CviKI_1	RGCY	6 cut(s)	41, 50, 110, 154, 174, 253
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	1 cut(s)	255
EaeI	YGGCCR	2 cut(s)	39, 172
EcoT22I	ATGCAT	1 cut(s)	90
FaeI	CATG	3 cut(s)	49, 88, 230
FaiI	YATR	5 cut(s)	15, 47, 86, 228, 265
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	45, 84, 226
HaeIII	GGCC	4 cut(s)	41, 110, 154, 174
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	3 cut(s)	49, 88, 230
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	142, 246
Hpy188III	TCNNGA	2 cut(s)	34, 76
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	70, 82, 88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 232
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	49, 88, 230
LpnPI	CCDG	4 cut(s)	55, 124, 132, 147
LweI	GCATC	2 cut(s)	57, 69
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	129
MlsI	TGGCCA	2 cut(s)	41, 174
MluCI	AATT	3 cut(s)	71, 129, 201
MluNI	TGGCCA	2 cut(s)	41, 174
MnlI	CCTC	1 cut(s)	166
Mox20I	TGGCCA	2 cut(s)	41, 174
Mph1103I	ATGCAT	1 cut(s)	90
MscI	TGGCCA	2 cut(s)	41, 174
Msp20I	TGGCCA	2 cut(s)	41, 174
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	47, 232
NciI	CCSGG	1 cut(s)	112
NlaIII	CATG	3 cut(s)	49, 88, 230
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	2 cut(s)	88, 230
PctI	GAATGC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	112
SfaNI	GCATC	2 cut(s)	57, 69
Sse9I	AATT	3 cut(s)	71, 129, 201
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	119
TasI	AATT	3 cut(s)	71, 129, 201
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	2 cut(s)	88, 230
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.