Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

23149635 .. 23152234

Gene Structure 2600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCCATGGCTACTATATCTCTTCCATTCACGACTAGCATCATGTTTCTTTTGGGACTCCTGGTCGGAATCCTTTATATACCAGGTGCACAATCATCCGTAGGTGTTTGTTATGGAATGATGGGCAACAACCTCCCTTCTCACTCGGAAGTCATATCTCTCCTCAAATCAAACAATATTGATCGGACGAGACTCTATGAACCAAACCACGGTGCTCTTGAAGCTCTCCGAGGCTCCAACATCGAACTCATCCTCGGTGTCCCAAACTCACTCCTTCAGGACTTCGCCGCCAACCCTTCCAATGCCCAAAATTGGGTACAAACAAATGTCCTCAACTTCTACCCTAGCGTCAGAATCAAGTACATTGCCGTTGGAAATGAAGTAAGCCCCGTCAATGGAGACACATCTCTGGCACAGTTCCTCCTCCCCGCCATGCAGCATGTGTACCAGGCCGTCAGAGCAGCCAACCTACATGACCTAATCAAGGTCTCTACCGCCATCGACACCACCTTAATAGGAGTCTCGTACCCTCCATCGCAAGGCGCATTTCGCGGTGACGTGAGAGGCTATTTGGACCCAATTATCGGCTACTTGGTTTATGCTCAAGCACCATTACTAGCTAACATCTACACATATTTTAGTTACGCTGGAAACCCTAGAGACATCTCTCTTCCTTATGCCTTGTTCACTTCGCCTTCGGTTGTTGCTTGGGATGGTGATAAAGGATACCAAAACCTGTTCGACGCGATGCTGGATGGTTTGTACTCGGCTCTAGAGGGAGCCTGGGGTGGTTCTTTGGAGGTTGTTGTGTCCGAAAGCGGGTGGCCATCGGCAGGTGGCTTTGGAACATCTCCTGAGAATGCTCAGACTTATTACTCCAAATTGATTCAGCATGTGAAAGGTGGAACCCCAAAGAGGCCTAATAAAGCCATAGAGACTTACTTGTTTGCCTTGTTTGATGAAAACCAGAAAAGTCCAGAGCTGGAGAAACACTTTGGCGTTTTCTACCCTAATAAACAGCCAAAGTATCAGCTCGGTGGTTTCGGCGGAGGAAGATTGGAAACTAGTAATTCTGCTGAGTATAATGTTACCACTTCTCTCAAGAGTGATACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002215 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009817 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

372

Amino Acids

40.27

Weight (kDa)

5.53

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	34 - 345	2.7e-112	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	824
AccII	CGCG	2 cut(s)	552, 746
AciI	CCGC	6 cut(s)	288, 429, 495, 552, 819, 1047
AcoI	YGGCCR	2 cut(s)	3, 824
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	5 cut(s)	318, 362, 446, 527, 764
AgsI	TTSAA	1 cut(s)	221
AhdI	GACNNNNNGTC	1 cut(s)	62
AhlI	ACTAGT	1 cut(s)	1064
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	4 cut(s)	60, 82, 447, 782
AluBI	AGCT	4 cut(s)	224, 620, 982, 1033
AluI	AGCT	4 cut(s)	224, 620, 982, 1033
Alw21I	GWGCWC	2 cut(s)	91, 217
Alw26I	GTCTC	6 cut(s)	184, 393, 493, 526, 654, 929
Alw44I	GTGCAC	1 cut(s)	87
AoxI	GGCC	4 cut(s)	3, 450, 824, 917
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	436, 461
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	2 cut(s)	566, 728
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	91
BalI	TGGCCA	2 cut(s)	5, 826
Bbv12I	GWGCWC	2 cut(s)	91, 217
BbvI	GCAGC	2 cut(s)	448, 473
BccI	CCATC	6 cut(s)	115, 506, 541, 707, 749, 835
BceAI	ACGGC	2 cut(s)	353, 437
BciT130I	CCWGG	4 cut(s)	62, 84, 449, 784
BciVI	GTATCC	1 cut(s)	719
BcoDI	GTCTC	6 cut(s)	184, 393, 493, 526, 654, 929
BcuI	ACTAGT	1 cut(s)	1064
BfaI	CTAG	6 cut(s)	36, 345, 617, 657, 773, 1065
BfuAI	ACCTGC	1 cut(s)	824
BfuI	GTATCC	1 cut(s)	719
BisI	GCNGC	3 cut(s)	288, 437, 462
BlsI	GCNGC	3 cut(s)	289, 438, 463
Bme1390I	CCNGG	4 cut(s)	62, 84, 449, 784
Bme18I	GGWCC	1 cut(s)	574
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	4 cut(s)	235, 576, 781, 907
BmrFI	CCNGG	4 cut(s)	62, 84, 449, 784
BmsI	GCATC	2 cut(s)	48, 738
BpmI	CTGGAG	1 cut(s)	1004
BpuEI	CTTGAG	2 cut(s)	588, 1085
BsaAI	YACGTR	1 cut(s)	1113
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	5 cut(s)	6, 208, 229, 253, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	4 cut(s)	62, 84, 449, 784
BseDI	CCNNGG	5 cut(s)	6, 208, 229, 253, 783
BseGI	GGATG	4 cut(s)	95, 249, 718, 760
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	846, 878, 1068
BseRI	GAGGAG	2 cut(s)	152, 413
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	448, 473
Bsh1236I	CGCG	2 cut(s)	552, 746
BshFI	GGCC	4 cut(s)	5, 452, 826, 919
BsiHKAI	GWGCWC	2 cut(s)	91, 217
BslFI	GGGAC	2 cut(s)	69, 245
BsmAI	GTCTC	6 cut(s)	184, 393, 493, 526, 654, 929
BsmFI	GGGAC	2 cut(s)	69, 245
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	4 cut(s)	5, 452, 826, 919
Bso31I	GGTCTC	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	91, 217
Bsp143I	GATC	1 cut(s)	181
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	6 cut(s)	288, 429, 495, 552, 819, 1047
BspANI	GGCC	4 cut(s)	5, 452, 826, 919
BspCNI	CTCAG	3 cut(s)	847, 877, 1069
BspFNI	CGCG	2 cut(s)	552, 746
BspLI	GGNNCC	4 cut(s)	235, 576, 781, 907
BspMI	ACCTGC	1 cut(s)	824
BspTNI	GGTCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	363
BssECI	CCNNGG	5 cut(s)	6, 208, 229, 253, 783
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	4 cut(s)	62, 84, 449, 784
Bst4CI	ACNGT	2 cut(s)	212, 417
Bst6I	CTCTTC	2 cut(s)	27, 675
BstBAI	YACGTR	1 cut(s)	1113
BstDEI	CTNAG	3 cut(s)	855, 864, 1077
BstDSI	CCRYGG	2 cut(s)	6, 208
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	4 cut(s)	95, 249, 718, 760
BstFNI	CGCG	2 cut(s)	552, 746
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	6 cut(s)	184, 393, 493, 526, 654, 929
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 458, 549
BstNI	CCWGG	4 cut(s)	62, 84, 449, 784
BstNSI	RCATGY	2 cut(s)	443, 896
BstSCI	CCNGG	4 cut(s)	60, 82, 447, 782
BstSLI	GKGCMC	1 cut(s)	91
BstSNI	TACGTA	1 cut(s)	1113
BstUI	CGCG	2 cut(s)	552, 746
BstV1I	GCAGC	2 cut(s)	448, 473
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	4 cut(s)	5, 452, 826, 919
BtgI	CCRYGG	2 cut(s)	6, 208
BtgZI	GCGATG	2 cut(s)	519, 761
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	4 cut(s)	95, 249, 718, 760
BveI	ACCTGC	1 cut(s)	824
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	574
CseI	GACGC	2 cut(s)	337, 752
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	5 cut(s)	317, 361, 445, 526, 763
CviAII	CATG	6 cut(s)	7, 43, 433, 440, 473, 893
CviQI	GTAC	5 cut(s)	317, 361, 445, 526, 763
DdeI	CTNAG	3 cut(s)	855, 864, 1077
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DriI	GACNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	2 cut(s)	3, 824
Eam1104I	CTCTTC	2 cut(s)	27, 675
Eam1105I	GACNNNNNGTC	1 cut(s)	62
EarI	CTCTTC	2 cut(s)	27, 675
EciI	GGCGGA	1 cut(s)	1062
Eco105I	TACGTA	1 cut(s)	1113
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	919
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRII	CCWGG	4 cut(s)	60, 82, 447, 782
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	6 cut(s)	10, 46, 436, 443, 476, 896
FaqI	GGGAC	2 cut(s)	69, 245
FatI	CATG	6 cut(s)	6, 42, 432, 439, 472, 892
FauI	CCCGC	2 cut(s)	436, 812
Fnu4HI	GCNGC	3 cut(s)	288, 437, 462
FokI	GGATG	4 cut(s)	82, 236, 725, 767
Fsp4HI	GCNGC	3 cut(s)	288, 437, 462
FspBI	CTAG	6 cut(s)	36, 345, 617, 657, 773, 1065
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	3 cut(s)	288, 437, 462
GsuI	CTGGAG	1 cut(s)	1004
HaeIII	GGCC	4 cut(s)	5, 452, 826, 919
HgaI	GACGC	2 cut(s)	337, 752
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	6 cut(s)	10, 46, 436, 443, 476, 896
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	6 cut(s)	57, 69, 192, 354, 519, 886
HphI	GGTGA	2 cut(s)	566, 728
Hpy166II	GTNNAC	3 cut(s)	89, 445, 687
Hpy188I	TCNGA	8 cut(s)	68, 148, 186, 230, 353, 458, 814, 867
Hpy188III	TCNNGA	7 cut(s)	31, 218, 278, 773, 854, 977, 1102
Hpy8I	GTNNAC	3 cut(s)	89, 445, 687
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	4 cut(s)	147, 284, 306, 705
HpyCH4III	ACNGT	2 cut(s)	212, 417
HpyCH4IV	ACGT	2 cut(s)	558, 1112
HpyCH4V	TGCA	2 cut(s)	89, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 458, 549
HpyF3I	CTNAG	3 cut(s)	855, 864, 1077
HpySE526I	ACGT	2 cut(s)	558, 1112
Hsp92II	CATG	6 cut(s)	10, 46, 436, 443, 476, 896
HspAI	GCGC	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	239, 779
Lsp1109I	GCAGC	2 cut(s)	448, 473
LweI	GCATC	2 cut(s)	48, 738
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	6 cut(s)	36, 345, 617, 657, 773, 1065
MaeII	ACGT	2 cut(s)	558, 1112
MaeIII	GTNAC	3 cut(s)	554, 641, 1087
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	14, 662, 1065
MhlI	GDGCHC	2 cut(s)	91, 217
MlsI	TGGCCA	2 cut(s)	5, 826
MluCI	AATT	4 cut(s)	310, 579, 881, 1069
MluNI	TGGCCA	2 cut(s)	5, 826
MlyI	GAGTC	3 cut(s)	51, 186, 528
MmeI	TCCRAC	3 cut(s)	46, 261, 352
Mox20I	TGGCCA	2 cut(s)	5, 826
MscI	TGGCCA	2 cut(s)	5, 826
MseI	TTAA	1 cut(s)	512
Msp20I	TGGCCA	2 cut(s)	5, 826
MspR9I	CCNGG	4 cut(s)	62, 84, 449, 784
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	4 cut(s)	62, 84, 449, 784
MvnI	CGCG	2 cut(s)	552, 746
MwoI	GCNNNNNNNGC	3 cut(s)	221, 458, 549
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	6 cut(s)	10, 46, 436, 443, 476, 896
NlaIV	GGNNCC	4 cut(s)	235, 576, 781, 907
NmeAIII	GCCGAG	1 cut(s)	746
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	2 cut(s)	443, 896
PaqCI	CACCTGC	1 cut(s)	824
PceI	AGGCCT	1 cut(s)	919
PctI	GAATGC	1 cut(s)	865
PfeI	GAWTC	3 cut(s)	69, 354, 886
PkrI	GCNGC	3 cut(s)	289, 438, 463
PleI	GAGTC	3 cut(s)	51, 186, 527
PpsI	GAGTC	3 cut(s)	51, 186, 527
Ppu21I	YACGTR	1 cut(s)	1113
Psp6I	CCWGG	4 cut(s)	60, 82, 447, 782
PspGI	CCWGG	4 cut(s)	60, 82, 447, 782
PspN4I	GGNNCC	4 cut(s)	235, 576, 781, 907
PspPI	GGNCC	1 cut(s)	574
RsaI	GTAC	5 cut(s)	318, 362, 446, 527, 764
RsaNI	GTAC	5 cut(s)	317, 361, 445, 526, 763
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	3 cut(s)	288, 437, 462
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	3 cut(s)	51, 186, 528
ScrFI	CCNGG	4 cut(s)	62, 84, 449, 784
SduI	GDGCHC	2 cut(s)	91, 217
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	48, 738
SinI	GGWCC	1 cut(s)	574
SmlI	CTYRAG	2 cut(s)	603, 1100
SmoI	CTYRAG	2 cut(s)	603, 1100
SnaBI	TACGTA	1 cut(s)	1113
SpeI	ACTAGT	1 cut(s)	1064
Sse9I	AATT	4 cut(s)	310, 579, 881, 1069
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	6 cut(s)	288, 429, 495, 552, 819, 1047
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	6 cut(s)	36, 345, 617, 657, 773, 1065
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	4 cut(s)	60, 82, 447, 782
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	212, 417
TaiI	ACGT	2 cut(s)	561, 1115
TaqI	TCGA	3 cut(s)	243, 501, 741
TasI	AATT	4 cut(s)	310, 579, 881, 1069
TatI	WGTACW	2 cut(s)	360, 762
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	3 cut(s)	69, 354, 886
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	2 cut(s)	436, 461
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	213, 393, 975
TspGWI	ACGGA	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	574
XagI	CCTNNNNNAGG	1 cut(s)	482
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	2 cut(s)	443, 896
XspI	CTAG	6 cut(s)	36, 345, 617, 657, 773, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.