Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

3658626 .. 3660274

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCAAAGTCCAATGTACTAGCCAAAAGCCCTTCCATGCTCCCGAAAATGCTACTTTTTGGTACGCTAGTAATGGCTTCCGTAGCAACAACTGCAGGTTCTAAGATTGGAGTGTGTTATGGAACCAAAGGAGACAACTTACCGCCAGCACAAGAAGTAATATCTATGTTCGACCAGTATGGTATTCAAAAAATTCGTCTCTATGATCCTAACCAAGGTGCTCTCCAAGCCCTTAGAGGCTCCAACATCGAGGTCATGCTTGGTGTTGAGAACGACCGCCTCCAATACATTTCTTCAAGCCAAGACGAGGCTAATTCCTGGGTCCAAAGTAATGTCGTAAACTATGGCAGTGTAAATTTCAAATACATTGTTGTGGGAAATGAAATAGATCCCACAGGTCCACAAGCATCGTTTGTTGCCCCTGCAATGGAAAACATTCAAAAAGCAATTACTGCGGAGAATCTTGCCGGAAAGATCAAAGTCTCCACTGCCATTTCCACCGCTGTCCTTGAAGAACCCTCTTACCCTCCATCAAAAGGATCATTCCGTATTGACCATTTACCATTTCTTAACCCCATCTTGGCCTTCTTAGCACGCAATCAATCTCCCTTGCTCGTTCATATTTACCCTTATTTTACTTACAATCAAAACCGTCAGATTAATATCGAGTATGCTCTTTTTACATCTCCATCACCTGTGGTGCATGATGGCCAGCTCGGGTATCAAAACCTGTTTGATGCCACTCTCGATACAGTTTACTCAGCACTGGAGAGAGCCGGAAGCGGTTCCGTGAGTATCGTTGTATCGGAGTCCGGTTGGCCCTCCGCTGGTGGGGATGGAGAGGTGACTACAATGGCGAATGCAAGGATTTACAACTCCAATTTGATCAATCATGTCAAGAGTAATGGTACTCCGAAGAAACCTGGAAGCCCTATAGAGACTTATATATTTGCCATGTTTAATGAAAATCAAAAGCCAGGGCCAGAGACTGAGAGACACTGGGGGCTCTTCTACCCAACCAAACAGCCTAAATATCCCATTGATTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

351

Amino Acids

38.24

Weight (kDa)

5.99

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	36 - 349	3e-105	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AciI	CCGC	6 cut(s)	143, 277, 455, 501, 783, 825
AclWI	GGATC	3 cut(s)	200, 383, 547
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	2 cut(s)	192, 355
AfaI	GTAC	3 cut(s)	18, 64, 910
AfiI	CCNNNNNNNGG	7 cut(s)	215, 307, 427, 536, 580, 827, 831
AgsI	TTSAA	6 cut(s)	188, 297, 361, 440, 512, 1048
AjnI	CCWGG	3 cut(s)	317, 922, 976
AluBI	AGCT	1 cut(s)	715
AluI	AGCT	1 cut(s)	715
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	6 cut(s)	126, 203, 487, 932, 980, 988
AlwI	GGATC	3 cut(s)	200, 383, 547
AlwNI	CAGNNNCTG	1 cut(s)	989
Ama87I	CYCGRG	1 cut(s)	716
AoxI	GGCC	4 cut(s)	582, 709, 818, 980
ApoI	RAATTY	2 cut(s)	192, 355
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AseI	ATTAAT	1 cut(s)	660
Asp700I	GAANNNNTTC	2 cut(s)	435, 784
AspS9I	GGNCC	4 cut(s)	322, 398, 819, 980
AsuHPI	GGTGA	2 cut(s)	684, 856
AvaI	CYCGRG	1 cut(s)	716
AvaII	GGWCC	2 cut(s)	322, 398
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BalI	TGGCCA	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	1008
Bbv12I	GWGCWC	1 cut(s)	223
BccI	CCATC	5 cut(s)	538, 584, 697, 701, 830
BciT130I	CCWGG	3 cut(s)	319, 924, 978
BclI	TGATCA	1 cut(s)	885
BcoDI	GTCTC	6 cut(s)	126, 203, 487, 932, 980, 988
BfaI	CTAG	2 cut(s)	20, 68
BfmI	CTRYAG	2 cut(s)	93, 933
BfuAI	ACCTGC	1 cut(s)	86
Bme1390I	CCNGG	3 cut(s)	319, 924, 978
Bme18I	GGWCC	2 cut(s)	322, 398
BmeT110I	CYCGRG	1 cut(s)	716
BmgT120I	GGNCC	4 cut(s)	322, 398, 819, 980
BmiI	GGNNCC	4 cut(s)	124, 241, 323, 787
BmrFI	CCNGG	3 cut(s)	319, 924, 978
BmrI	ACTGGG	1 cut(s)	1009
BmsI	GCATC	2 cut(s)	416, 727
BmuI	ACTGGG	1 cut(s)	1009
BpmI	CTGGAG	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	662
BsaJI	CCNNGG	3 cut(s)	214, 318, 977
BsaWI	WCCGGW	1 cut(s)	812
Bsc4I	CCNNNNNNNGG	7 cut(s)	215, 307, 427, 536, 580, 827, 831
Bse1I	ACTGG	3 cut(s)	175, 771, 1004
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	662
BseBI	CCWGG	3 cut(s)	319, 924, 978
BseDI	CCNNGG	3 cut(s)	214, 318, 977
BseGI	GGATG	1 cut(s)	841
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	7 cut(s)	215, 307, 427, 536, 580, 827, 831
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	774, 981
BseNI	ACTGG	3 cut(s)	175, 771, 1004
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	4 cut(s)	584, 711, 820, 982
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	3 cut(s)	468, 777, 813
BslI	CCNNNNNNNGG	7 cut(s)	215, 307, 427, 536, 580, 827, 831
BsmAI	GTCTC	6 cut(s)	126, 203, 487, 932, 980, 988
BsmBI	CGTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	4 cut(s)	584, 711, 820, 982
BsoBI	CYCGRG	1 cut(s)	716
Bsp1286I	GDGCHC	2 cut(s)	223, 1008
Bsp143I	GATC	5 cut(s)	205, 388, 474, 539, 885
BspACI	CCGC	6 cut(s)	143, 277, 455, 501, 783, 825
BspANI	GGCC	4 cut(s)	584, 711, 820, 982
BspCNI	CTCAG	2 cut(s)	773, 982
BspLI	GGNNCC	4 cut(s)	124, 241, 323, 787
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	3 cut(s)	200, 383, 547
BspQI	GCTCTTC	1 cut(s)	1013
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	175, 771, 1004
BssECI	CCNNGG	3 cut(s)	214, 318, 977
BssMI	GATC	5 cut(s)	205, 388, 474, 539, 885
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	3 cut(s)	319, 924, 978
Bst4CI	ACNGT	2 cut(s)	653, 754
Bst6I	CTCTTC	1 cut(s)	1013
BstAPI	GCANNNNNTGC	2 cut(s)	92, 452
BstC8I	GCNNGC	3 cut(s)	147, 595, 713
BstDEI	CTNAG	5 cut(s)	102, 233, 589, 760, 990
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	841
BstKTI	GATC	5 cut(s)	208, 391, 477, 542, 888
BstMAI	GTCTC	6 cut(s)	126, 203, 487, 932, 980, 988
BstMBI	GATC	5 cut(s)	205, 388, 474, 539, 885
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 92, 227, 452, 590
BstNI	CCWGG	3 cut(s)	319, 924, 978
BstSCI	CCNGG	3 cut(s)	317, 922, 976
BstSFI	CTRYAG	2 cut(s)	93, 933
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	4 cut(s)	584, 711, 820, 982
BtsCI	GGATG	1 cut(s)	841
BtsI	GCAGTG	2 cut(s)	355, 486
BtsIMutI	CAGTG	4 cut(s)	355, 486, 764, 997
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	147, 595, 713
CaiI	CAGNNNCTG	1 cut(s)	989
Cfr13I	GGNCC	4 cut(s)	322, 398, 819, 980
Csp6I	GTAC	3 cut(s)	17, 63, 909
CviAII	CATG	5 cut(s)	37, 256, 704, 893, 955
CviQI	GTAC	3 cut(s)	17, 63, 909
DdeI	CTNAG	5 cut(s)	102, 233, 589, 760, 990
DpnI	GATC	5 cut(s)	207, 390, 476, 541, 887
DpnII	GATC	5 cut(s)	205, 388, 474, 539, 885
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	1013
EarI	CTCTTC	1 cut(s)	1013
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	1008
Eco47I	GGWCC	2 cut(s)	322, 398
Eco88I	CYCGRG	1 cut(s)	716
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoRII	CCWGG	3 cut(s)	317, 922, 976
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	1008
ErhI	CCWWGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	5 cut(s)	40, 259, 707, 896, 958
FatI	CATG	5 cut(s)	36, 255, 703, 892, 954
FbaI	TGATCA	1 cut(s)	885
FokI	GGATG	1 cut(s)	848
FriOI	GRGCYC	1 cut(s)	1008
FspBI	CTAG	2 cut(s)	20, 68
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	4 cut(s)	584, 711, 820, 982
HapII	CCGG	3 cut(s)	468, 777, 813
Hin1II	CATG	5 cut(s)	40, 259, 707, 896, 958
HinfI	GANTC	2 cut(s)	460, 809
HpaII	CCGG	3 cut(s)	468, 777, 813
HphI	GGTGA	2 cut(s)	684, 856
Hpy166II	GTNNAC	3 cut(s)	340, 401, 757
Hpy188I	TCNGA	3 cut(s)	657, 808, 915
Hpy188III	TCNNGA	3 cut(s)	43, 746, 898
Hpy8I	GTNNAC	3 cut(s)	340, 401, 757
HpyAV	CCTTC	2 cut(s)	42, 595
HpyCH4III	ACNGT	2 cut(s)	653, 754
HpyCH4V	TGCA	4 cut(s)	95, 425, 703, 863
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 92, 227, 452, 590
HpyF3I	CTNAG	5 cut(s)	102, 233, 589, 760, 990
Hsp92II	CATG	5 cut(s)	40, 259, 707, 896, 958
Ksp22I	TGATCA	1 cut(s)	885
Kzo9I	GATC	5 cut(s)	205, 388, 474, 539, 885
LguI	GCTCTTC	1 cut(s)	1013
LmnI	GCTCC	2 cut(s)	45, 245
LweI	GCATC	2 cut(s)	416, 727
MaeI	CTAG	2 cut(s)	20, 68
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	5 cut(s)	207, 390, 476, 541, 887
MboI	GATC	5 cut(s)	205, 388, 474, 539, 885
MboII	GAAGA	4 cut(s)	285, 524, 928, 1000
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	223, 1008
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	5 cut(s)	192, 313, 355, 447, 880
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	230, 244, 290, 301, 529, 537, 832, 835
Mox20I	TGGCCA	1 cut(s)	711
MroXI	GAANNNNTTC	2 cut(s)	435, 784
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	3 cut(s)	570, 660, 960
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	2 cut(s)	503, 827
MspI	CCGG	3 cut(s)	468, 777, 813
MspR9I	CCNGG	3 cut(s)	319, 924, 978
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	3 cut(s)	319, 924, 978
MwoI	GCNNNNNNNGC	5 cut(s)	83, 92, 227, 452, 590
NdeII	GATC	5 cut(s)	205, 388, 474, 539, 885
NlaIII	CATG	5 cut(s)	40, 259, 707, 896, 958
NlaIV	GGNNCC	4 cut(s)	124, 241, 323, 787
NmuCI	GTSAC	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	1013
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	2 cut(s)	435, 784
PfeI	GAWTC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	817
PpsI	GAGTC	1 cut(s)	817
PshBI	ATTAAT	1 cut(s)	660
Psp6I	CCWGG	3 cut(s)	317, 922, 976
PspGI	CCWGG	3 cut(s)	317, 922, 976
PspN4I	GGNNCC	4 cut(s)	124, 241, 323, 787
PspPI	GGNCC	4 cut(s)	322, 398, 819, 980
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	989
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	3 cut(s)	18, 64, 910
RsaNI	GTAC	3 cut(s)	17, 63, 909
RseI	CAYNNNNRTG	1 cut(s)	371
SapI	GCTCTTC	1 cut(s)	1013
SaqAI	TTAA	3 cut(s)	570, 660, 960
Sau3AI	GATC	5 cut(s)	205, 388, 474, 539, 885
Sau96I	GGNCC	4 cut(s)	322, 398, 819, 980
SchI	GAGTC	1 cut(s)	818
ScrFI	CCNGG	3 cut(s)	319, 924, 978
SduI	GDGCHC	2 cut(s)	223, 1008
SetI	ASST	9 cut(s)	100, 220, 255, 400, 697, 717, 732, 846, 925
SfaNI	GCATC	2 cut(s)	416, 727
SfcI	CTRYAG	2 cut(s)	93, 933
SinI	GGWCC	2 cut(s)	322, 398
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	192, 313, 355, 447, 880
SsiI	CCGC	6 cut(s)	143, 277, 455, 501, 783, 825
SspMI	CTAG	2 cut(s)	20, 68
StyD4I	CCNGG	3 cut(s)	317, 922, 976
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	653, 754
TaqI	TCGA	4 cut(s)	171, 249, 666, 747
TasI	AATT	5 cut(s)	192, 313, 355, 447, 880
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	3 cut(s)	570, 660, 960
Tru9I	TTAA	3 cut(s)	570, 660, 960
TscAI	CASTG	4 cut(s)	355, 493, 771, 1004
TseFI	GTSAC	1 cut(s)	844
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	3 cut(s)	396, 608, 978
TspGWI	ACGGA	3 cut(s)	70, 536, 778
TspRI	CASTG	4 cut(s)	355, 493, 771, 1004
VpaK11BI	GGWCC	2 cut(s)	322, 398
VspI	ATTAAT	1 cut(s)	660
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	2 cut(s)	192, 355
XmnI	GAANNNNTTC	2 cut(s)	435, 784
XspI	CTAG	2 cut(s)	20, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.