Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

18787325 .. 18788191

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCTACCATAACCAGAAAGAAGCTCCTTAACACTGTGACAGCCGTTGACATAGGCTGCAGCAGCTGCAGAAGACCAAAGCTCTTCCACATATTCCGTCCCAAGGCAAAGCTCATCACCACCAAGTTCGGCGGCCGCAAACAAAACCACCACCACTACTCTTCTTCGAGCTCCTCCAACAAAGACTCCACCACCACCACATTCTCCCCAAACACCGACGACTACGCTTCTTTTTCCGACCACGGGACCGTCGCCAAGAGCGCCACGCCGGTCAAGGGGTTCGGCAGGGTTGGCGGCGAGAGCGTGGCGGTGGAGAAGGACTCCGGCGACCCTTACTTGGACTTTAGGCATTCCATGCTTCAGATGATTTTGGAGAACGAGATATACTCGAAAGATGATCTCCGGGAGCTTCTCAACTGCTTCTTGCAGCTCAACGCGCCTTGCAACCATGGCATCATCATCAGGGCTTTCACTGACATCTGGAATGGAGTCTTCTCCGTTAGGTCTAGTGCTTCCACAATGCAGCTTCGTCTTGCTCGCAAGTCACGTGACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

185

Amino Acids

20.71

Weight (kDa)

9.56

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	108 - 164	4.1e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	437
AciI	CCGC	4 cut(s)	132, 136, 294, 308
AcoI	YGGCCR	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	548
AfiI	CCNNNNNNNGG	4 cut(s)	103, 243, 275, 337
AluBI	AGCT	8 cut(s)	25, 66, 82, 112, 171, 409, 430, 526
AluI	AGCT	8 cut(s)	25, 66, 82, 112, 171, 409, 430, 526
Alw21I	GWGCWC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	6 cut(s)	57, 60, 63, 66, 427, 523
AspLEI	GCGC	2 cut(s)	263, 439
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	548
BbsI	GAAGAC	2 cut(s)	79, 484
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	6 cut(s)	44, 53, 72, 75, 439, 535
BceAI	ACGGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	404
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	2 cut(s)	58, 67
BfoI	RGCGCY	1 cut(s)	264
BisI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
BlsI	GCNGC	9 cut(s)	59, 62, 65, 68, 134, 137, 296, 429, 525
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	2 cut(s)	79, 484
BplI	GAGNNNNNCTC	4 cut(s)	305, 337, 371, 403
BpuMI	CCSGG	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	102, 241, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 243, 275, 337
Bse118I	RCCGGY	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	102, 241, 448
BseLI	CCNNNNNNNGG	4 cut(s)	103, 243, 275, 337
BseRI	GAGGAG	1 cut(s)	163
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	6 cut(s)	44, 53, 72, 75, 439, 535
Bsh1236I	CGCG	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	269, 324, 403
BslFI	GGGAC	2 cut(s)	84, 259
BslI	CCNNNNNNNGG	4 cut(s)	103, 243, 275, 337
BsmFI	GGGAC	2 cut(s)	84, 259
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	397
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	4 cut(s)	132, 136, 294, 308
BspANI	GGCC	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	2 cut(s)	62, 71
BspQI	GCTCTTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	102, 241, 448
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	2 cut(s)	102, 448
Bst4CI	ACNGT	2 cut(s)	37, 250
Bst6I	CTCTTC	2 cut(s)	89, 166
BstAPI	GCANNNNNTGC	2 cut(s)	66, 355
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	538
BstDSI	CCRYGG	2 cut(s)	241, 448
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	263, 439
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	8 cut(s)	63, 66, 260, 291, 300, 355, 436, 450
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	2 cut(s)	58, 67
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	6 cut(s)	44, 53, 72, 75, 439, 535
BstV2I	GAAGAC	2 cut(s)	79, 484
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	2 cut(s)	241, 448
BtsIMutI	CAGTG	2 cut(s)	33, 471
Cac8I	GCNNGC	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	66
CciNI	GCGGCCGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	263, 439
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	2 cut(s)	355, 449
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	89, 166
EarI	CTCTTC	2 cut(s)	89, 166
Ecl136II	GAGCTC	1 cut(s)	171
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	102, 448
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	102, 448
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	102, 448
FaeI	CATG	2 cut(s)	358, 452
FaiI	YATR	6 cut(s)	11, 53, 92, 356, 385, 450
FaqI	GGGAC	2 cut(s)	84, 259
FatI	CATG	2 cut(s)	354, 448
Fnu4HI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	2 cut(s)	262, 438
GluI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	3 cut(s)	269, 324, 403
HhaI	GCGC	2 cut(s)	263, 439
Hin1II	CATG	2 cut(s)	358, 452
Hin6I	GCGC	2 cut(s)	261, 437
HinP1I	GCGC	2 cut(s)	261, 437
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	185, 320, 489
HpaII	CCGG	3 cut(s)	269, 324, 403
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	238, 363
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	221, 254
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	37, 250
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	60, 69, 427, 444, 523
HpyF10VI	GCNNNNNNNGC	8 cut(s)	63, 66, 260, 291, 300, 355, 436, 450
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	2 cut(s)	358, 452
HspAI	GCGC	2 cut(s)	261, 437
Kzo9I	GATC	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	30, 176, 406
LpnPI	CCDG	7 cut(s)	28, 271, 282, 337, 416, 448, 466
Lsp1109I	GCAGC	6 cut(s)	44, 53, 72, 75, 439, 535
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	37, 543, 548
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	5 cut(s)	76, 84, 153, 156, 484
MhlI	GDGCHC	1 cut(s)	173
MlyI	GAGTC	3 cut(s)	179, 314, 498
MmeI	TCCRAC	2 cut(s)	201, 261
MnlI	CCTC	1 cut(s)	184
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	3 cut(s)	269, 324, 403
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	349
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	8 cut(s)	63, 66, 260, 291, 300, 355, 436, 450
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	358, 452
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	3 cut(s)	37, 543, 548
NotI	GCGGCCGC	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	544
PctI	GAATGC	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	9 cut(s)	59, 62, 65, 68, 134, 137, 296, 429, 525
PleI	GAGTC	3 cut(s)	179, 314, 497
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	3 cut(s)	179, 314, 497
Ppu21I	YACGTR	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	173
PspCI	CACGTG	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	246
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
PstI	CTGCAG	2 cut(s)	62, 71
PstNI	CAGNNNCTG	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	3 cut(s)	179, 314, 498
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	2 cut(s)	58, 67
SinI	GGWCC	1 cut(s)	246
SsiI	CCGC	4 cut(s)	132, 136, 294, 308
SspMI	CTAG	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	102, 448
TaaI	ACNGT	2 cut(s)	37, 250
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	2 cut(s)	167, 389
TauI	GCSGC	3 cut(s)	135, 138, 297
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	40, 478
TseFI	GTSAC	3 cut(s)	37, 543, 548
TseI	GCWGC	6 cut(s)	57, 60, 63, 66, 427, 523
Tsp45I	GTSAC	3 cut(s)	37, 543, 548
TspGWI	ACGGA	2 cut(s)	86, 487
TspRI	CASTG	2 cut(s)	40, 478
VpaK11BI	GGWCC	1 cut(s)	246
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.