Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

30416032 .. 30416355

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCGGCTATATGGTCCTAACCATGACGCTCTCGAAGCTCTTAGAGGCTCCAATATCGAGCTCATGCTTGGGGTCGAACACGAACGCCTTCAGGACATATCTTCTAACCAAGCCAGAGCTGATGATTGGGTCCAAAACAATGTGGTAACCTATGGAGATGTCAATTTCAAATACATTGCAGTTGGGAATGAAATAGAATCTGGTCCATTTGCACAATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATGCAATTTCTAAGGCCGGTCTTGCAAACAAAATTAAAGTCTCGACAGCGGTTCATCCTATAGTCCTCCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

107

Amino Acids

11.75

Weight (kDa)

5.25

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 102	1.5e-26	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 296
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	169, 245
AluBI	AGCT	3 cut(s)	38, 61, 119
AluI	AGCT	3 cut(s)	38, 61, 119
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	223, 261
ApoI	RAATTY	1 cut(s)	240
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
Asp700I	GAANNNNTTC	2 cut(s)	87, 240
AspS9I	GGNCC	4 cut(s)	14, 130, 203, 224
AvaII	GGWCC	3 cut(s)	14, 130, 203
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	292
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	3 cut(s)	14, 130, 203
BmgT120I	GGNCC	4 cut(s)	14, 130, 203, 224
BmiI	GGNNCC	2 cut(s)	49, 131
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	225, 263
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	225, 263
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	2 cut(s)	4, 296
BspANI	GGCC	2 cut(s)	225, 263
BspLI	GGNNCC	2 cut(s)	49, 131
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	41, 258
BstDSI	CCRYGG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 269
BstPI	GGTNACC	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	225, 263
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	4 cut(s)	14, 130, 203, 224
CseI	GACGC	1 cut(s)	35
CviAII	CATG	3 cut(s)	23, 64, 232
CviJI	RGCY	8 cut(s)	7, 38, 48, 61, 113, 119, 225, 263
CviKI_1	RGCY	8 cut(s)	7, 38, 48, 61, 113, 119, 225, 263
DdeI	CTNAG	2 cut(s)	41, 258
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	3 cut(s)	14, 130, 203
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	26, 67, 235
FaiI	YATR	8 cut(s)	10, 12, 24, 65, 98, 153, 233, 308
FatI	CATG	3 cut(s)	22, 63, 231
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	225, 263
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	26, 67, 235
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	264
Hpy188III	TCNNGA	3 cut(s)	32, 92, 289
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	179, 212, 251, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 269
HpyF3I	CTNAG	2 cut(s)	41, 258
Hsp92II	CATG	3 cut(s)	26, 67, 235
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	5 cut(s)	77, 127, 186, 240, 277
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	5 cut(s)	163, 215, 240, 252, 279
MnlI	CCTC	2 cut(s)	38, 323
MroXI	GAANNNNTTC	2 cut(s)	87, 240
MseI	TTAA	2 cut(s)	282, 322
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	35, 269
NcoI	CCATGG	1 cut(s)	231
NlaIII	CATG	3 cut(s)	26, 67, 235
NlaIV	GGNNCC	2 cut(s)	49, 131
PdmI	GAANNNNTTC	2 cut(s)	87, 240
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	49, 131
PspPI	GGNCC	4 cut(s)	14, 130, 203, 224
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	282, 322
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	4 cut(s)	14, 130, 203, 224
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	4 cut(s)	40, 63, 121, 152
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	3 cut(s)	14, 130, 203
Sse9I	AATT	5 cut(s)	163, 215, 240, 252, 279
SsiI	CCGC	2 cut(s)	4, 296
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	4 cut(s)	33, 57, 75, 290
TasI	AATT	5 cut(s)	163, 215, 240, 252, 279
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	282, 322
Tru9I	TTAA	2 cut(s)	282, 322
TspDTI	ATGAA	2 cut(s)	204, 290
VpaK11BI	GGWCC	3 cut(s)	14, 130, 203
XapI	RAATTY	1 cut(s)	240
XmnI	GAANNNNTTC	2 cut(s)	87, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.