Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8177358.1

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 348

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8177358.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 203 bp

tgctcctgcaagatggccatcttcagtatcgaaacttgttcgatgtagatctggatgcacattacgctgctttagagagagtcgggggaggttctatgaaaactattatgttggagataggttggccatcagtgggtggggatagcaaaatgacaagcaaggagaatgccagaattttcaactcgaatttgatcaagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

66

Amino Acids

7.36

Weight (kDa)

6.29

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	15, 124
AcsI	RAATTY	2 cut(s)	173, 186
AcuI	CTGAAG	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	180
AoxI	GGCC	2 cut(s)	15, 124
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	173, 186
BalI	TGGCCA	2 cut(s)	17, 126
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	3 cut(s)	7, 26, 135
BclI	TGATCA	1 cut(s)	191
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmsI	GCATC	1 cut(s)	45
BsaBI	GATNNNNATC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse8I	GATNNNNATC	2 cut(s)	17, 47
BseGI	GGATG	1 cut(s)	60
BseJI	GATNNNNATC	2 cut(s)	17, 47
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	17, 126
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	2 cut(s)	17, 126
Bsp143I	GATC	2 cut(s)	48, 191
BspANI	GGCC	2 cut(s)	17, 126
BssMI	GATC	2 cut(s)	48, 191
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	51, 194
BstMBI	GATC	2 cut(s)	48, 191
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	17, 126
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	137
CviJI	RGCY	2 cut(s)	17, 126
CviKI_1	RGCY	2 cut(s)	17, 126
DpnI	GATC	2 cut(s)	50, 193
DpnII	GATC	2 cut(s)	48, 191
EaeI	YGGCCR	2 cut(s)	15, 124
Eco57I	CTGAAG	1 cut(s)	7
FaiI	YATR	2 cut(s)	97, 109
FbaI	TGATCA	1 cut(s)	191
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	17, 126
HinfI	GANTC	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	9, 58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	191
Kzo9I	GATC	2 cut(s)	48, 191
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	3 cut(s)	19, 37, 183
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	45
MalI	GATC	2 cut(s)	50, 193
MboI	GATC	2 cut(s)	48, 191
MboII	GAAGA	1 cut(s)	13
MflI	RGATCY	1 cut(s)	48
MlsI	TGGCCA	2 cut(s)	17, 126
MluCI	AATT	2 cut(s)	173, 186
MluNI	TGGCCA	2 cut(s)	17, 126
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	1 cut(s)	82
Mox20I	TGGCCA	2 cut(s)	17, 126
MscI	TGGCCA	2 cut(s)	17, 126
Msp20I	TGGCCA	2 cut(s)	17, 126
Mva1269I	GAATGC	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	2 cut(s)	48, 191
PctI	GAATGC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	48
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	48, 191
SchI	GAGTC	1 cut(s)	89
SetI	ASST	2 cut(s)	93, 123
SfaNI	GCATC	1 cut(s)	45
SgeI	CNNG	9 cut(s)	18, 22, 48, 64, 96, 167, 171, 182, 195
Sse9I	AATT	2 cut(s)	173, 186
TaqI	TCGA	3 cut(s)	30, 41, 184
TasI	AATT	2 cut(s)	173, 186
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	137
XapI	RAATTY	2 cut(s)	173, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.