Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

68811249 .. 68813828

Gene Structure 2580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG487900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCACAAGATGGCTAAGTCCCATGTAGTTGCCAAAGTCCCTTTTGTAGTTTCCAAGTTACTAGTACTATTGGGTATCCTCATGGCTACCTTTACCACAACAGGTGCCCAGGTTGGTGTTTGTTATGGAACTGTCGCAAACAACTTGCCACCCCCACGAGAAGTTATATCACTTTACAACCAATATAACATCAAAAGGATGCGGCTTTATGGTCCTAACCATGATGCTCTCGAAGCTCTTAGAGGCTCCAACATTGAGCTCATGCTTGGTGTCGAAAACGAACGCCTTCGGGATATTTCTTCTAACCAAGCCAGTGCTGATGATTGGGTCCAAAAAAATGTTGTGACCTATGGAAATGTCAATTTCAAGTACATTGCGGTTGGAAATGAAATAGATGCTAAAGGGCAATTAGCACCATTTGTTGGCCCTGCCATGGAAAAAATTCACAATGCAATTTCGAGGGCTGGTCTTGCAAACAAAATTAAAGTCTCCACGGCCGTTCATCCTGTAATTCTCCAAGAATCCTACCCTCCATCAAAAGGATCATTCAGGCAGGATTACCGACCATTTCTTGATCCTATCATTGGTTTCCTAGTGGGAAATAAATCTCCATTGCTTCTAAATATGTACCCATACTTTAGTTTCATTCAAAACCGAGCAAACATTGACCTTCGATATGCTCTTTTTACATCTCCGTCAGTCGTGGTTCAAGATGGACAATCTGGCTATCAAAATCTGTTTGATGCACTTCTTGATGCACATTACTCCGCTTTAGAGAAGGCTGGGGGTGGTTCTTTGAGAATTGTTGTATCGGAGACTGGTTGGCCCTCTGCTGGTGGTGATGGTCAAGTGACAACAAAGGAGAATGCGAGAATTTACAACTCAAATGTGATCAAGCATGTCAAGGGCGGTACTCCAAAGAGACCTGGAGGTTCCATAGAAACTTACATATTTGCCATGTTCAATGAGAATCAAAAACCTGGAGACGAGACTGAGAAAAATTTCGGCCTCTTTTACCCAAGCAAAAATCCGGTTTATCCCATAAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

351

Amino Acids

38.64

Weight (kDa)

9.22

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	38 - 350	2.8e-110	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	422
AciI	CCGC	4 cut(s)	202, 377, 768, 909
AclWI	GGATC	2 cut(s)	550, 569
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	4 cut(s)	441, 873, 1000, 1045
AfaI	GTAC	4 cut(s)	66, 371, 629, 913
AfiI	CCNNNNNNNGG	5 cut(s)	422, 433, 539, 584, 833
AgsI	TTSAA	5 cut(s)	367, 650, 710, 964, 1051
AhlI	ACTAGT	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	108, 925, 979
AluBI	AGCT	2 cut(s)	236, 259
AluI	AGCT	2 cut(s)	236, 259
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	5 cut(s)	493, 809, 916, 978, 983
AlwI	GGATC	2 cut(s)	550, 569
AoxI	GGCC	4 cut(s)	424, 495, 824, 1006
ApoI	RAATTY	4 cut(s)	441, 873, 1000, 1045
ArsI	GACNNNNNNTTYG	2 cut(s)	471, 503
Asp700I	GAANNNNTTC	3 cut(s)	285, 441, 1001
AspS9I	GGNCC	4 cut(s)	212, 328, 425, 825
AsuHPI	GGTGA	1 cut(s)	851
AvaII	GGWCC	2 cut(s)	212, 328
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	261
BccI	CCATC	4 cut(s)	4, 541, 707, 836
BceAI	ACGGC	2 cut(s)	482, 510
BciT130I	CCWGG	3 cut(s)	110, 927, 981
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	891
BcoDI	GTCTC	5 cut(s)	493, 809, 916, 978, 983
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	2 cut(s)	62, 593
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	3 cut(s)	110, 927, 981
Bme18I	GGWCC	2 cut(s)	212, 328
BmgT120I	GGNCC	4 cut(s)	212, 328, 425, 825
BmiI	GGNNCC	4 cut(s)	106, 247, 329, 934
BmrFI	CCNGG	3 cut(s)	110, 927, 981
BmsI	GCATC	5 cut(s)	189, 214, 385, 733, 745
BpmI	CTGGAG	2 cut(s)	948, 1002
BsaI	GGTCTC	1 cut(s)	916
BsaJI	CCNNGG	3 cut(s)	108, 432, 492
BsaWI	WCCGGW	1 cut(s)	1030
Bsc4I	CCNNNNNNNGG	5 cut(s)	422, 433, 539, 584, 833
Bse1I	ACTGG	2 cut(s)	312, 823
Bse3DI	GCAATG	2 cut(s)	372, 611
BseBI	CCWGG	3 cut(s)	110, 927, 981
BseDI	CCNNGG	3 cut(s)	108, 432, 492
BseGI	GGATG	2 cut(s)	204, 502
BseLI	CCNNNNNNNGG	5 cut(s)	422, 433, 539, 584, 833
BseMI	GCAATG	2 cut(s)	372, 611
BseMII	CTCAG	1 cut(s)	984
BseNI	ACTGG	2 cut(s)	312, 823
BseSI	GKGCMC	1 cut(s)	109
BseX3I	CGGCCG	1 cut(s)	495
BseYI	CCCAGC	1 cut(s)	782
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	4 cut(s)	426, 497, 826, 1008
BshNI	GGYRCC	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	1031
BslFI	GGGAC	2 cut(s)	4, 23
BslI	CCNNNNNNNGG	5 cut(s)	422, 433, 539, 584, 833
BsmAI	GTCTC	5 cut(s)	493, 809, 916, 978, 983
BsmBI	CGTCTC	1 cut(s)	978
BsmFI	GGGAC	2 cut(s)	4, 23
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	4 cut(s)	426, 497, 826, 1008
Bso31I	GGTCTC	1 cut(s)	916
Bsp1286I	GDGCHC	2 cut(s)	109, 261
Bsp143I	GATC	3 cut(s)	542, 574, 891
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	4 cut(s)	202, 377, 768, 909
BspANI	GGCC	4 cut(s)	426, 497, 826, 1008
BspCNI	CTCAG	1 cut(s)	985
BspLI	GGNNCC	4 cut(s)	106, 247, 329, 934
BspPI	GGATC	2 cut(s)	550, 569
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	916
BsrDI	GCAATG	2 cut(s)	372, 611
BsrI	ACTGG	2 cut(s)	312, 823
BssECI	CCNNGG	3 cut(s)	108, 432, 492
BssMI	GATC	3 cut(s)	542, 574, 891
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	3 cut(s)	110, 927, 981
Bst4CI	ACNGT	1 cut(s)	133
BstDEI	CTNAG	3 cut(s)	15, 239, 993
BstDSI	CCRYGG	2 cut(s)	432, 492
BstF5I	GGATG	2 cut(s)	204, 502
BstKTI	GATC	3 cut(s)	545, 577, 894
BstMAI	GTCTC	5 cut(s)	493, 809, 916, 978, 983
BstMBI	GATC	3 cut(s)	542, 574, 891
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 470
BstNI	CCWGG	3 cut(s)	110, 927, 981
BstNSI	RCATGY	1 cut(s)	902
BstSCI	CCNGG	3 cut(s)	108, 925, 979
BstSLI	GKGCMC	1 cut(s)	109
BstZI	CGGCCG	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	426, 497, 826, 1008
BtgI	CCRYGG	2 cut(s)	432, 492
BtsCI	GGATG	2 cut(s)	204, 502
BtsIMutI	CAGTG	1 cut(s)	319
Cfr13I	GGNCC	4 cut(s)	212, 328, 425, 825
Csp6I	GTAC	4 cut(s)	65, 370, 628, 912
CviAII	CATG	7 cut(s)	23, 82, 221, 262, 433, 899, 958
CviQI	GTAC	4 cut(s)	65, 370, 628, 912
DdeI	CTNAG	3 cut(s)	15, 239, 993
DpnI	GATC	3 cut(s)	544, 576, 893
DpnII	GATC	3 cut(s)	542, 574, 891
EaeI	YGGCCR	1 cut(s)	495
EagI	CGGCCG	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	916
Eco47I	GGWCC	2 cut(s)	212, 328
Eco52I	CGGCCG	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	108, 925, 979
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	978
FaeI	CATG	7 cut(s)	26, 85, 224, 265, 436, 902, 961
FaqI	GGGAC	2 cut(s)	4, 23
FatI	CATG	7 cut(s)	22, 81, 220, 261, 432, 898, 957
FbaI	TGATCA	1 cut(s)	891
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	211, 489
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	2 cut(s)	62, 593
GluI	GCNGC	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	786
GsuI	CTGGAG	2 cut(s)	948, 1002
HaeIII	GGCC	4 cut(s)	426, 497, 826, 1008
HapII	CCGG	1 cut(s)	1031
Hin1II	CATG	7 cut(s)	26, 85, 224, 265, 436, 902, 961
HinfI	GANTC	2 cut(s)	521, 970
HpaII	CCGG	1 cut(s)	1031
HphI	GGTGA	1 cut(s)	851
Hpy188I	TCNGA	1 cut(s)	814
Hpy188III	TCNNGA	5 cut(s)	230, 290, 572, 710, 752
HpyAV	CCTTC	3 cut(s)	296, 680, 772
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	5 cut(s)	4, 452, 473, 746, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 470
HpyF3I	CTNAG	3 cut(s)	15, 239, 993
Hsp92II	CATG	7 cut(s)	26, 85, 224, 265, 436, 902, 961
Ksp22I	TGATCA	1 cut(s)	891
Kzo9I	GATC	3 cut(s)	542, 574, 891
LmnI	GCTCC	1 cut(s)	251
LweI	GCATC	5 cut(s)	189, 214, 385, 733, 745
MaeI	CTAG	2 cut(s)	62, 593
MaeIII	GTNAC	3 cut(s)	57, 343, 850
MalI	GATC	3 cut(s)	544, 576, 893
MboI	GATC	3 cut(s)	542, 574, 891
MboII	GAAGA	1 cut(s)	291
MhlI	GDGCHC	2 cut(s)	109, 261
MmeI	TCCRAC	2 cut(s)	273, 361
MnlI	CCTC	7 cut(s)	89, 236, 453, 540, 838, 923, 1019
MroXI	GAANNNNTTC	3 cut(s)	285, 441, 1001
MseI	TTAA	1 cut(s)	483
MspI	CCGG	1 cut(s)	1031
MspR9I	CCNGG	3 cut(s)	110, 927, 981
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	3 cut(s)	110, 927, 981
MwoI	GCNNNNNNNGC	2 cut(s)	233, 470
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	3 cut(s)	542, 574, 891
NlaIII	CATG	7 cut(s)	26, 85, 224, 265, 436, 902, 961
NlaIV	GGNNCC	4 cut(s)	106, 247, 329, 934
NmuCI	GTSAC	2 cut(s)	343, 850
NspI	RCATGY	1 cut(s)	902
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	3 cut(s)	285, 441, 1001
PfeI	GAWTC	2 cut(s)	521, 970
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	3 cut(s)	108, 925, 979
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	3 cut(s)	108, 925, 979
PspN4I	GGNNCC	4 cut(s)	106, 247, 329, 934
PspPI	GGNCC	4 cut(s)	212, 328, 425, 825
RsaI	GTAC	4 cut(s)	66, 371, 629, 913
RsaNI	GTAC	4 cut(s)	65, 370, 628, 912
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	542, 574, 891
Sau96I	GGNCC	4 cut(s)	212, 328, 425, 825
ScaI	AGTACT	1 cut(s)	66
ScrFI	CCNGG	3 cut(s)	110, 927, 981
SduI	GDGCHC	2 cut(s)	109, 261
SfaNI	GCATC	5 cut(s)	189, 214, 385, 733, 745
SinI	GGWCC	2 cut(s)	212, 328
SpeI	ACTAGT	1 cut(s)	61
SsiI	CCGC	4 cut(s)	202, 377, 768, 909
SspMI	CTAG	2 cut(s)	62, 593
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	108, 925, 979
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	4 cut(s)	231, 273, 458, 673
TatI	WGTACW	2 cut(s)	64, 369
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	521, 970
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	343, 850
Tsp45I	GTSAC	2 cut(s)	343, 850
TspDTI	ATGAA	3 cut(s)	402, 491, 634
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	212, 328
XapI	RAATTY	4 cut(s)	441, 873, 1000, 1045
XceI	RCATGY	1 cut(s)	902
XmnI	GAANNNNTTC	3 cut(s)	285, 441, 1001
XspI	CTAG	2 cut(s)	62, 593
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.