Rorug03G0210200

Glucan endo-1,3-beta-glucosidase, basic

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
18748508 .. 18749885
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0210200.1

Sequence Viewer

Length: 858 bp
ATGTCGTCGTTCTCCTCCTCCTCCTCATCAGAACCCCCGCCGCCTTGTTCAGAAATCCGAATCCGATCGGTATGGGCCGATAACCTCGACGACGAGTTCGACAAGATCCGATCCGTTATCGACGAATTCCCGATGATCTCCATGGACACGGAGTTTCCCGGCGTCGTTTTCCGGCCCAACGCCGAGGATCCGAATTTCCGGCACCTGGATCGCGCCGACGCGAACTATCTCGTTCTCAAGGCGAACGTGGACCGGCTGAATCTGATCCAGGTCGGGCTGACTCTCTCGGACCGCGGCGGGAATTTGCCGGATTTAGGATCGGAGAACAAGTATATTTGGGAATTCAATTTCAGAGACTTCGACGTGGGGCGTGACCCCCACGCTCACGACTCCATCGAGTTGCTGCGGCGGCAGGGCATCGATTTCGAGCGCAACCGGGACAGAGGGATCGACTCGTACAAATTCGCCCAGCTGATGATGTCATCGGGCCTCGTGTGCAACGAGGACGTGACGTGGATCACGTTTCACAGCGCGTACGATTTCGGATACCTGGTCAAGCTGTTGACGCAGCAAGCGTTGCCGGAGGAGCTGCCGGGATTCTTGAACCGGGTGAAGGTGTTCTTTGGTTCCGGAGGGTACGACGTGAAGCACCTGACCAAGTTCTGTGCTCATCTCTATGGTGGATTGGACCGGGTTTGCCAGGCCTTAAATGTGGGCCGGGCCATTGGAAAAAGCCACCAGGCCGGGTCGGATAGCCTCCTGACTTTGCATGCGTACCAGAGGATCAAAGAGCTCTTCTTTAGCAAAGATGGAATAGAGCAGTACGCTGGCGTTTTGTATGGTCTAGAGGGAGCTTAG

Protein Analysis

285

Amino Acids

32.2

Weight (kDa)

5.19

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 24 - 150 4.9e-10 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16260 AT4G16260
fragaria_vesca FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis pycom12g07050 pycom12g07100
rosa_chinensis RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 201
AccII CGCG 4 cut(s) 213, 221, 294, 533
AccIII TCCGGA 1 cut(s) 629
AciI CCGC 7 cut(s) 38, 41, 292, 294, 297, 406, 409
AcsI RAATTY 5 cut(s) 125, 193, 301, 341, 461
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 5 cut(s) 458, 536, 638, 776, 824
AfiI CCNNNNNNNGG 3 cut(s) 205, 314, 613
AgsI TTSAA 2 cut(s) 346, 604
AjiI CACGTC 4 cut(s) 364, 508, 513, 643
AjnI CCWGG 5 cut(s) 204, 267, 549, 699, 738
AluBI AGCT 5 cut(s) 472, 559, 589, 793, 854
AluI AGCT 5 cut(s) 472, 559, 589, 793, 854
Alw21I GWGCWC 2 cut(s) 670, 795
Alw26I GTCTC 1 cut(s) 348
Aor13HI TCCGGA 1 cut(s) 629
AoxI GGCC 7 cut(s) 75, 173, 487, 702, 715, 720, 741
ApeKI GCWGC 3 cut(s) 403, 568, 589
ApoI RAATTY 5 cut(s) 125, 193, 301, 341, 461
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
Asp700I GAANNNNTTC 1 cut(s) 617
AspLEI GCGC 3 cut(s) 215, 432, 533
AspS9I GGNCC 8 cut(s) 75, 174, 250, 289, 487, 688, 715, 720
AsuC2I CCSGG 7 cut(s) 159, 437, 594, 608, 692, 719, 745
AsuHPI GGTGA 1 cut(s) 622
AvaII GGWCC 3 cut(s) 250, 289, 688
BamHI GGATCC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 795
BauI CACGAG 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 670, 795
BbvI GCAGC 3 cut(s) 390, 576, 580
BccI CCATC 2 cut(s) 401, 803
BcgI CGANNNNNNTGC 4 cut(s) 191, 225, 406, 440
BciT130I CCWGG 5 cut(s) 206, 269, 551, 701, 740
BciVI GTATCC 1 cut(s) 539
BcnI CCSGG 7 cut(s) 159, 437, 594, 608, 692, 719, 745
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 845
BfuI GTATCC 1 cut(s) 539
BisI GCNGC 7 cut(s) 41, 295, 404, 407, 410, 569, 590
BlsI GCNGC 7 cut(s) 42, 296, 405, 408, 411, 570, 591
Bme18I GGWCC 3 cut(s) 250, 289, 688
BmgBI CACGTC 4 cut(s) 364, 508, 513, 643
BmgT120I GGNCC 8 cut(s) 75, 174, 250, 289, 487, 688, 715, 720
BmiI GGNNCC 3 cut(s) 189, 203, 628
BmsI GCATC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 7 cut(s) 159, 437, 594, 608, 692, 719, 745
Bsa29I ATCGAT 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 141, 183, 292
BsaWI WCCGGW 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 314, 613
Bse118I RCCGGY 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 629
BseBI CCWGG 5 cut(s) 206, 269, 551, 701, 740
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 141, 183, 292
BseLI CCNNNNNNNGG 3 cut(s) 205, 314, 613
BseRI GAGGAG 5 cut(s) 4, 7, 10, 13, 599
BseXI GCAGC 3 cut(s) 390, 576, 580
BseYI CCCAGC 1 cut(s) 468
Bsh1236I CGCG 4 cut(s) 213, 221, 294, 533
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 7 cut(s) 77, 175, 489, 704, 717, 722, 743
BshNI GGYRCC 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 670, 795
BsiWI CGTACG 1 cut(s) 534
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 3 cut(s) 205, 314, 613
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 7 cut(s) 77, 175, 489, 704, 717, 722, 743
Bsp1286I GDGCHC 2 cut(s) 670, 795
Bsp13I TCCGGA 1 cut(s) 629
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 7 cut(s) 38, 41, 292, 294, 297, 406, 409
BspANI GGCC 7 cut(s) 77, 175, 489, 704, 717, 722, 743
BspDI ATCGAT 1 cut(s) 420
BspEI TCCGGA 1 cut(s) 629
BspFNI CGCG 4 cut(s) 213, 221, 294, 533
BspLI GGNNCC 3 cut(s) 189, 203, 628
BspQI GCTCTTC 1 cut(s) 800
BspT107I GGYRCC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 141, 183, 292
BssNI GRCGYC 1 cut(s) 162
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 5 cut(s) 206, 269, 551, 701, 740
Bst6I CTCTTC 1 cut(s) 800
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 573, 771, 829
BstDEI CTNAG 1 cut(s) 855
BstDSI CCRYGG 2 cut(s) 141, 292
BstFNI CGCG 4 cut(s) 213, 221, 294, 533
BstHHI GCGC 3 cut(s) 215, 432, 533
BstMAI GTCTC 1 cut(s) 348
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 5 cut(s) 409, 495, 565, 577, 586
BstNI CCWGG 5 cut(s) 206, 269, 551, 701, 740
BstNSI RCATGY 1 cut(s) 773
BstUI CGCG 4 cut(s) 213, 221, 294, 533
BstV1I GCAGC 3 cut(s) 390, 576, 580
BstX2I RGATCY 2 cut(s) 105, 187
BstYI RGATCY 2 cut(s) 105, 187
Bsu15I ATCGAT 1 cut(s) 420
BsuI GTATCC 1 cut(s) 539
BsuRI GGCC 7 cut(s) 77, 175, 489, 704, 717, 722, 743
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 2 cut(s) 141, 292
BtrI CACGTC 4 cut(s) 364, 508, 513, 643
Cac8I GCNNGC 3 cut(s) 573, 771, 829
CfoI GCGC 3 cut(s) 215, 432, 533
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 8 cut(s) 75, 174, 250, 289, 487, 688, 715, 720
Cfr42I CCGCGG 1 cut(s) 295
ClaI ATCGAT 1 cut(s) 420
CpoI CGGWCCG 1 cut(s) 289
CseI GACGC 3 cut(s) 151, 227, 574
CsiI ACCWGGT 1 cut(s) 549
Csp6I GTAC 5 cut(s) 457, 535, 637, 775, 823
CspI CGGWCCG 1 cut(s) 289
CviAII CATG 2 cut(s) 142, 770
CviQI GTAC 5 cut(s) 457, 535, 637, 775, 823
DdeI CTNAG 1 cut(s) 855
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 704
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 3 cut(s) 250, 289, 688
Eco53kI GAGCTC 1 cut(s) 793
EcoICRI GAGCTC 1 cut(s) 793
EcoRI GAATTC 2 cut(s) 125, 341
EcoRII CCWGG 5 cut(s) 204, 267, 549, 699, 738
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 145, 773
FaiI YATR 6 cut(s) 73, 143, 333, 678, 771, 840
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 1 cut(s) 452
FatI CATG 2 cut(s) 141, 769
FauI CCCGC 2 cut(s) 45, 290
Fnu4HI GCNGC 7 cut(s) 41, 295, 404, 407, 410, 569, 590
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 7 cut(s) 41, 295, 404, 407, 410, 569, 590
FspBI CTAG 1 cut(s) 845
GlaI GCGC 3 cut(s) 214, 431, 532
GluI GCNGC 7 cut(s) 41, 295, 404, 407, 410, 569, 590
GsaI CCCAGC 1 cut(s) 472
HaeIII GGCC 7 cut(s) 77, 175, 489, 704, 717, 722, 743
HgaI GACGC 3 cut(s) 151, 227, 574
HhaI GCGC 3 cut(s) 215, 432, 533
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 145, 773
Hin6I GCGC 3 cut(s) 213, 430, 531
HinP1I GCGC 3 cut(s) 213, 430, 531
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 6 cut(s) 60, 259, 280, 389, 452, 597
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 2 cut(s) 250, 564
Hpy188III TCNNGA 6 cut(s) 130, 386, 601, 630, 760, 845
Hpy8I GTNNAC 2 cut(s) 250, 564
Hpy99I CGWCG 8 cut(s) 10, 92, 95, 125, 167, 221, 365, 644
HpyAV CCTTC 1 cut(s) 607
HpyCH4IV ACGT 6 cut(s) 246, 363, 507, 512, 521, 642
HpyCH4V TGCA 2 cut(s) 498, 769
HpyF10VI GCNNNNNNNGC 5 cut(s) 409, 495, 565, 577, 586
HpyF3I CTNAG 1 cut(s) 855
HpySE526I ACGT 6 cut(s) 246, 363, 507, 512, 521, 642
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 145, 773
HspAI GCGC 3 cut(s) 213, 430, 531
Kpn2I TCCGGA 1 cut(s) 629
KspI CCGCGG 1 cut(s) 295
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 2 cut(s) 586, 851
Lsp1109I GCAGC 3 cut(s) 390, 576, 580
LweI GCATC 1 cut(s) 426
MabI ACCWGGT 1 cut(s) 549
MaeI CTAG 1 cut(s) 845
MaeII ACGT 6 cut(s) 246, 363, 507, 512, 521, 642
MaeIII GTNAC 2 cut(s) 371, 508
MboII GAAGA 1 cut(s) 787
MflI RGATCY 2 cut(s) 105, 187
MhlI GDGCHC 2 cut(s) 670, 795
MluCI AATT 6 cut(s) 125, 193, 301, 341, 346, 461
MlyI GAGTC 3 cut(s) 274, 383, 446
MmeI TCCRAC 1 cut(s) 729
MroI TCCGGA 1 cut(s) 629
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 1 cut(s) 707
MslI CAYNNNNRTG 1 cut(s) 675
MspA1I CMGCKG 2 cut(s) 294, 472
MvaI CCWGG 5 cut(s) 206, 269, 551, 701, 740
MvnI CGCG 4 cut(s) 213, 221, 294, 533
MwoI GCNNNNNNNGC 5 cut(s) 409, 495, 565, 577, 586
NciI CCSGG 7 cut(s) 159, 437, 594, 608, 692, 719, 745
NcoI CCATGG 1 cut(s) 141
NlaIII CATG 2 cut(s) 145, 773
NlaIV GGNNCC 3 cut(s) 189, 203, 628
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 371, 508
NspI RCATGY 1 cut(s) 773
PaeI GCATGC 1 cut(s) 773
PceI AGGCCT 1 cut(s) 704
PciSI GCTCTTC 1 cut(s) 800
PcsI WCGNNNNNNNCGW 5 cut(s) 96, 393, 498, 518, 572
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 3 cut(s) 60, 259, 597
Pfl23II CGTACG 1 cut(s) 534
PkrI GCNGC 7 cut(s) 42, 296, 405, 408, 411, 570, 591
Ple19I CGATCG 1 cut(s) 68
PleI GAGTC 3 cut(s) 274, 383, 446
PpsI GAGTC 3 cut(s) 274, 383, 446
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 5 cut(s) 204, 267, 549, 699, 738
PspFI CCCAGC 1 cut(s) 468
PspGI CCWGG 5 cut(s) 204, 267, 549, 699, 738
PspLI CGTACG 1 cut(s) 534
PspN4I GGNNCC 3 cut(s) 189, 203, 628
PspPI GGNCC 8 cut(s) 75, 174, 250, 289, 487, 688, 715, 720
PsuI RGATCY 2 cut(s) 105, 187
PvuI CGATCG 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 5 cut(s) 458, 536, 638, 776, 824
RsaNI GTAC 5 cut(s) 457, 535, 637, 775, 823
RseI CAYNNNNRTG 1 cut(s) 675
Rsr2I CGGWCCG 1 cut(s) 289
RsrII CGGWCCG 1 cut(s) 289
SacI GAGCTC 1 cut(s) 795
SacII CCGCGG 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 7 cut(s) 41, 295, 404, 407, 410, 569, 590
Sau96I GGNCC 8 cut(s) 75, 174, 250, 289, 487, 688, 715, 720
SchI GAGTC 3 cut(s) 274, 383, 446
SduI GDGCHC 2 cut(s) 670, 795
SexAI ACCWGGT 1 cut(s) 549
SfaNI GCATC 1 cut(s) 426
Sfr303I CCGCGG 1 cut(s) 295
SgrBI CCGCGG 1 cut(s) 295
SinI GGWCC 3 cut(s) 250, 289, 688
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SphI GCATGC 1 cut(s) 773
Sse9I AATT 6 cut(s) 125, 193, 301, 341, 346, 461
SseBI AGGCCT 1 cut(s) 704
SsiI CCGC 7 cut(s) 38, 41, 292, 294, 297, 406, 409
SspMI CTAG 1 cut(s) 845
SstI GAGCTC 1 cut(s) 795
StuI AGGCCT 1 cut(s) 704
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 6 cut(s) 249, 366, 510, 515, 524, 645
TaqI TCGA 8 cut(s) 87, 99, 120, 360, 396, 420, 426, 450
TasI AATT 6 cut(s) 125, 193, 301, 341, 346, 461
TauI GCSGC 4 cut(s) 43, 297, 409, 412
TfiI GAWTC 3 cut(s) 60, 259, 597
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TseFI GTSAC 2 cut(s) 371, 508
TseI GCWGC 3 cut(s) 403, 568, 589
Tsp45I GTSAC 2 cut(s) 371, 508
TspGWI ACGGA 2 cut(s) 103, 164
VpaK11BI GGWCC 3 cut(s) 250, 289, 688
XapI RAATTY 5 cut(s) 125, 193, 301, 341, 461
XbaI TCTAGA 1 cut(s) 844
XceI RCATGY 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.