Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

29259388 .. 29260144

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAGTATAGAATTCAGAAAATCCGTCTCTATGATCCTAACCAAGGAGCTCTCCAAGCCCTTAGAGGCTTCAACATCGAGGTCATGCTTGGTGTTGAAAATGAACGCCTTCAAGACATTTCTTCTAGCCAAGACAAGGCTAATTCCTGGGTCCAAAGTAATGTCATAAACTATGGCAATGTCAATTTCAAATACATTGTTGTTGGAAACGAAATAGATCCTACAGGTCCTCAAGCATCATTTGTTGCCCCTGCAATGGAAAACATTCAAAAAGCAATTACTTCGGAGAATCTTGCCAGTAAAATCAAAGTCTCCACTGCCATTTCCACTGCCGTCCTCAAAGAACCCTCCTACCCTCCATCAAACGGATCATTCCGTATTGACCATTTACCATTTCTTAATCCCATCATCGCCTTCTTAGCACGCAACCAATCTCCACTACTCGTTAATCTATACACTTATTTTACTTACAATCAAAACAGTCAGATTAATATCGAGTATGCTCTTTTTACATCTCCATCACCTGTAGTGCATGATGGCCAGCTTGGGTATCAAAACCTGTTTGATGCTATTCTCGATACAGTTTACTCGGCACTAGAGAGAGCTGCAGCGATTCCTTGGGAATCGTTGTATCGGAGTCTGGTTGGCCCTCTTCCGGTGGGGATGGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

224

Amino Acids

24.96

Weight (kDa)

5.41

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	4 - 202	3.7e-54	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	29, 212, 376
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	12
AfiI	CCNNNNNNNGG	5 cut(s)	44, 136, 256, 365, 655
AgsI	TTSAA	5 cut(s)	73, 98, 113, 190, 269
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	50, 544, 605
AluI	AGCT	3 cut(s)	50, 544, 605
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	2 cut(s)	32, 316
AlwI	GGATC	3 cut(s)	29, 212, 376
AoxI	GGCC	2 cut(s)	538, 646
ApeKI	GCWGC	2 cut(s)	605, 608
ApoI	RAATTY	1 cut(s)	12
AseI	ATTAAT	1 cut(s)	489
Asp700I	GAANNNNTTC	2 cut(s)	108, 264
AspS9I	GGNCC	3 cut(s)	151, 227, 647
AsuHPI	GGTGA	1 cut(s)	513
AvaII	GGWCC	2 cut(s)	151, 227
BalI	TGGCCA	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	592, 620
BccI	CCATC	5 cut(s)	367, 413, 526, 530, 658
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	32, 316
BfaI	CTAG	2 cut(s)	126, 596
BfmI	CTRYAG	3 cut(s)	222, 525, 606
BisI	GCNGC	2 cut(s)	606, 609
BlsI	GCNGC	2 cut(s)	607, 610
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	2 cut(s)	151, 227
BmgT120I	GGNCC	3 cut(s)	151, 227, 647
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	245, 556
BpuEI	CTTGAG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	43, 147, 617
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 136, 256, 365, 655
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	184, 261
Bse8I	GATNNNNATC	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	43, 147, 617
BseGI	GGATG	1 cut(s)	669
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	5 cut(s)	44, 136, 256, 365, 655
BseMI	GCAATG	2 cut(s)	184, 261
BseNI	ACTGG	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	592, 620
BshFI	GGCC	2 cut(s)	540, 648
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	5 cut(s)	44, 136, 256, 365, 655
BsmAI	GTCTC	2 cut(s)	32, 316
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	540, 648
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	34, 217, 368
BspANI	GGCC	2 cut(s)	540, 648
BspLI	GGNNCC	1 cut(s)	152
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	3 cut(s)	29, 212, 376
BsrDI	GCAATG	2 cut(s)	184, 261
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	43, 147, 617
BssMI	GATC	3 cut(s)	34, 217, 368
BssT1I	CCWWGG	2 cut(s)	43, 617
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	482, 583
Bst6I	CTCTTC	1 cut(s)	657
BstC8I	GCNNGC	2 cut(s)	424, 542
BstDEI	CTNAG	2 cut(s)	62, 418
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	669
BstKTI	GATC	3 cut(s)	37, 220, 371
BstMAI	GTCTC	2 cut(s)	32, 316
BstMBI	GATC	3 cut(s)	34, 217, 368
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 419
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	3 cut(s)	222, 525, 606
BstV1I	GCAGC	2 cut(s)	592, 620
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	540, 648
BtgZI	GCGATG	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	669
BtsI	GCAGTG	2 cut(s)	315, 327
BtsIMutI	CAGTG	2 cut(s)	315, 327
Cac8I	GCNNGC	2 cut(s)	424, 542
Cfr13I	GGNCC	3 cut(s)	151, 227, 647
CviAII	CATG	2 cut(s)	85, 533
CviJI	RGCY	9 cut(s)	50, 59, 69, 129, 140, 540, 544, 605, 648
CviKI_1	RGCY	9 cut(s)	50, 59, 69, 129, 140, 540, 544, 605, 648
DdeI	CTNAG	2 cut(s)	62, 418
DpnI	GATC	3 cut(s)	36, 219, 370
DpnII	GATC	3 cut(s)	34, 217, 368
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	43, 617
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	151, 227
Eco53kI	GAGCTC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	43, 617
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	43, 617
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	88, 536
FaiI	YATR	8 cut(s)	9, 33, 86, 167, 174, 454, 501, 534
FatI	CATG	2 cut(s)	84, 532
Fnu4HI	GCNGC	2 cut(s)	606, 609
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	606, 609
FspBI	CTAG	2 cut(s)	126, 596
GluI	GCNGC	2 cut(s)	606, 609
HaeIII	GGCC	2 cut(s)	540, 648
HapII	CCGG	1 cut(s)	656
Hin1II	CATG	2 cut(s)	88, 536
HinfI	GANTC	4 cut(s)	289, 613, 623, 637
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	4 cut(s)	18, 286, 486, 636
Hpy188III	TCNNGA	2 cut(s)	113, 575
Hpy8I	GTNNAC	1 cut(s)	586
HpyAV	CCTTC	2 cut(s)	119, 424
HpyCH4III	ACNGT	2 cut(s)	482, 583
HpyCH4V	TGCA	4 cut(s)	4, 254, 532, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 419
HpyF3I	CTNAG	2 cut(s)	62, 418
Hsp92II	CATG	2 cut(s)	88, 536
Kzo9I	GATC	3 cut(s)	34, 217, 368
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	2 cut(s)	592, 620
LweI	GCATC	2 cut(s)	245, 556
MaeI	CTAG	2 cut(s)	126, 596
MalI	GATC	3 cut(s)	36, 219, 370
MboI	GATC	3 cut(s)	34, 217, 368
MboII	GAAGA	2 cut(s)	114, 644
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	4 cut(s)	12, 142, 184, 276
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	7 cut(s)	59, 73, 240, 347, 358, 366, 660
Mox20I	TGGCCA	1 cut(s)	540
MroXI	GAANNNNTTC	2 cut(s)	108, 264
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	3 cut(s)	399, 447, 489
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	56, 419
NdeII	GATC	3 cut(s)	34, 217, 368
NlaIII	CATG	2 cut(s)	88, 536
NlaIV	GGNNCC	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	569
PdmI	GAANNNNTTC	2 cut(s)	108, 264
PfeI	GAWTC	3 cut(s)	289, 613, 623
PkrI	GCNGC	2 cut(s)	607, 610
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
PpuMI	RGGWCCY	1 cut(s)	227
PshBI	ATTAAT	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	3 cut(s)	151, 227, 647
PspPPI	RGGWCCY	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	399, 447, 489
SatI	GCNGC	2 cut(s)	606, 609
Sau3AI	GATC	3 cut(s)	34, 217, 368
Sau96I	GGNCC	3 cut(s)	151, 227, 647
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	7 cut(s)	52, 84, 229, 526, 546, 561, 607
SfaNI	GCATC	2 cut(s)	245, 556
SfcI	CTRYAG	3 cut(s)	222, 525, 606
SinI	GGWCC	2 cut(s)	151, 227
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	4 cut(s)	12, 142, 184, 276
SspMI	CTAG	2 cut(s)	126, 596
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	43, 617
TaaI	ACNGT	2 cut(s)	482, 583
TaqI	TCGA	3 cut(s)	78, 495, 576
TasI	AATT	4 cut(s)	12, 142, 184, 276
TfiI	GAWTC	3 cut(s)	289, 613, 623
Tru1I	TTAA	3 cut(s)	399, 447, 489
Tru9I	TTAA	3 cut(s)	399, 447, 489
TscAI	CASTG	2 cut(s)	322, 334
TseI	GCWGC	2 cut(s)	605, 608
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	3 cut(s)	14, 365, 381
TspRI	CASTG	2 cut(s)	322, 334
VpaK11BI	GGWCC	2 cut(s)	151, 227
VspI	ATTAAT	1 cut(s)	489
XagI	CCTNNNNNAGG	1 cut(s)	42
XapI	RAATTY	1 cut(s)	12
XmnI	GAANNNNTTC	2 cut(s)	108, 264
XspI	CTAG	2 cut(s)	126, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.