Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

30545468 .. 30545896

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTACCCATACTTTAGTTACATTGACAACCGAGATATTAACCTTCAATATGCTCTTTTCAGATATCCATCAGTTCTGGTTCAAGATGGACAACTTGGCTACCAAAACTTGTTTGATGCACTTTTGGATGCACATTACTCCGCTTTAGAGAAGGCCGGAGGCGGTTCTTTGAAAATTGTTGTATCGGAGACGGGTTGGCCTTCCGCTGTTGGTGATGGCGAAGTGACAACAATAGAGAATGCGAGAATCTACAACTCAAATGTGATTAATCATGTCAAGGGTGGTACTCCGAAGAAACCTGAAGGTCCTATAGAAACTTACATATTTGCCATGTTCAATGAGAATGAGAAAACTGGAGCAGAGACTAAGAAGAATTTCGAGCTCTTTTTACCAACCGGAGATCCTGTTTATCCTACCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

142

Amino Acids

15.84

Weight (kDa)

4.81

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 141	3.2e-44	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	141, 162, 204
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	5, 286
AgsI	TTSAA	5 cut(s)	47, 83, 172, 337, 424
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	182, 356
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	2 cut(s)	153, 197
ApoI	RAATTY	1 cut(s)	373
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BccI	CCATC	3 cut(s)	76, 80, 209
BcoDI	GTCTC	2 cut(s)	182, 356
BfmI	CTRYAG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmsI	GCATC	2 cut(s)	106, 118
BpmI	CTGGAG	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bse1I	ACTGG	1 cut(s)	358
Bse8I	GATNNNNATC	1 cut(s)	67
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	155, 199
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	156, 396
BsmAI	GTCTC	2 cut(s)	182, 356
BsmBI	CGTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	155, 199
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	3 cut(s)	141, 162, 204
BspANI	GGCC	2 cut(s)	155, 199
BspPI	GGATC	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	2 cut(s)	182, 356
BstMBI	GATC	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	155, 199
BtsCI	GGATG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	4, 285
CviAII	CATG	2 cut(s)	272, 331
CviJI	RGCY	4 cut(s)	99, 155, 199, 382
CviKI_1	RGCY	4 cut(s)	99, 155, 199, 382
CviQI	GTAC	2 cut(s)	4, 285
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Ecl136II	GAGCTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	2 cut(s)	275, 334
FaiI	YATR	6 cut(s)	10, 51, 273, 311, 323, 332
FatI	CATG	2 cut(s)	271, 330
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	155, 199
HapII	CCGG	2 cut(s)	156, 396
Hin1II	CATG	2 cut(s)	275, 334
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	156, 396
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	3 cut(s)	62, 187, 291
Hpy188III	TCNNGA	1 cut(s)	83
HpyAV	CCTTC	4 cut(s)	53, 145, 210, 296
HpyCH4V	TGCA	2 cut(s)	119, 131
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	275, 334
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	6 cut(s)	62, 169, 312, 339, 409, 417
LweI	GCATC	2 cut(s)	106, 118
MaeIII	GTNAC	2 cut(s)	17, 223
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	2 cut(s)	304, 382
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	174, 373, 418
MnlI	CCTC	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	2 cut(s)	39, 267
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	156, 396
Mva1269I	GAATGC	1 cut(s)	244
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	275, 334
NmuCI	GTSAC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	305
PspPPI	RGGWCCY	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	2 cut(s)	5, 286
RsaNI	GTAC	2 cut(s)	4, 285
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	39, 267
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	4 cut(s)	45, 301, 307, 384
SfaNI	GCATC	2 cut(s)	106, 118
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	174, 373, 418
SsiI	CCGC	3 cut(s)	141, 162, 204
SstI	GAGCTC	1 cut(s)	384
TaqI	TCGA	1 cut(s)	378
TasI	AATT	3 cut(s)	174, 373, 418
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	39, 267
Tru9I	TTAA	2 cut(s)	39, 267
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.