Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

67708672 .. 67709255

Gene Structure 584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCAAGTCTCGTGTAGTTGTCGAAGTCCCTTCCATAGTTTCCAATTCAGTTGCTACTTTTTGTGATCCTAATGGCTACCTTTACCACAACAGCTCTCTCTCTTTCTCTCTCTCTCATAGTCAATCAGTGTGTTCTTATTATGTGCCCAGATTGGTGTTTGTCATGGAAAATGTCGAAAACGAACGCCTTGAGGACATTTCTTCTAACCAAGCCAGTGCCGATGATTGGGTCCAAAAAAATGTTGTAACCTATGGAAACGTCAATTTCAAATACATTGCGGTTGGAAATGACATAGATGCTACAGGTCCTTTAGCACCATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATGCAATTTCGAAAGCTGGTCTTGCTAATAAAATTAAAGTCTTCTCGGCAGTTCATCCTATAATCCTCCAAGAATCCTCCACTCCATCAATAGGACCATTCAGGCCGAATTACCGACCCTTTCTTGATCCTGTTTTGTTCTTCTTCTCTTCTAGTGGTGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

172

Amino Acids

18.73

Weight (kDa)

5.86

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	41 - 168	1.4e-22	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	62, 473
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	345
AfiI	CCNNNNNNNGG	4 cut(s)	228, 326, 337, 443
AgsI	TTSAA	2 cut(s)	271, 350
AluBI	AGCT	2 cut(s)	96, 368
AluI	AGCT	2 cut(s)	96, 368
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	62, 473
AoxI	GGCC	3 cut(s)	3, 328, 455
ApoI	RAATTY	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	4 cut(s)	232, 308, 329, 446
AsuII	TTCGAA	1 cut(s)	362
AvaII	GGWCC	3 cut(s)	232, 308, 446
BaeGI	GKGCMC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	385
BccI	CCATC	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	303
Bme18I	GGWCC	3 cut(s)	232, 308, 446
BmgT120I	GGNCC	4 cut(s)	232, 308, 329, 446
BmiI	GGNNCC	1 cut(s)	233
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	385
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	4 cut(s)	228, 326, 337, 443
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	4 cut(s)	228, 326, 337, 443
BseMI	GCAATG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	150
BshFI	GGCC	3 cut(s)	5, 330, 457
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	4 cut(s)	228, 326, 337, 443
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	3 cut(s)	5, 330, 457
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	67, 478
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	3 cut(s)	5, 330, 457
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	2 cut(s)	62, 473
BspT104I	TTCGAA	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	67, 478
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	505
BstBI	TTCGAA	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	2 cut(s)	70, 481
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	2 cut(s)	67, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	5, 330, 457
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	135, 223
Cfr13I	GGNCC	4 cut(s)	232, 308, 329, 446
CviAII	CATG	2 cut(s)	166, 337
CviJI	RGCY	7 cut(s)	5, 78, 96, 215, 330, 368, 457
CviKI_1	RGCY	7 cut(s)	5, 78, 96, 215, 330, 368, 457
DpnI	GATC	2 cut(s)	69, 480
DpnII	GATC	2 cut(s)	67, 478
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Eco130I	CCWWGG	1 cut(s)	336
Eco47I	GGWCC	3 cut(s)	232, 308, 446
EcoO109I	RGGNCCY	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	169, 340
FaiI	YATR	8 cut(s)	38, 120, 144, 167, 255, 296, 338, 413
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	2 cut(s)	165, 336
FokI	GGATG	1 cut(s)	393
FspBI	CTAG	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	5, 330, 457
Hin1II	CATG	2 cut(s)	169, 340
HinfI	GANTC	1 cut(s)	425
Hpy188III	TCNNGA	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	169, 340
Kzo9I	GATC	2 cut(s)	67, 478
LpnPI	CCDG	7 cut(s)	163, 229, 291, 345, 354, 439, 495
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	69, 480
MboI	GATC	2 cut(s)	67, 478
MboII	GAAGA	5 cut(s)	195, 385, 484, 487, 492
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	46, 265, 345, 357, 384, 460
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	187, 428, 439, 506
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	67, 478
NlaIII	CATG	2 cut(s)	169, 340
NlaIV	GGNNCC	1 cut(s)	233
NmeAIII	GCCGAG	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	4 cut(s)	232, 308, 329, 446
PspPPI	RGGWCCY	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	2 cut(s)	67, 478
Sau96I	GGNCC	4 cut(s)	232, 308, 329, 446
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	6 cut(s)	84, 98, 254, 264, 310, 370
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	3 cut(s)	232, 308, 446
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	6 cut(s)	46, 265, 345, 357, 384, 460
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	336
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	24, 177, 362
TasI	AATT	6 cut(s)	46, 265, 345, 357, 384, 460
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	2 cut(s)	135, 223
TspDTI	ATGAA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	135, 223
Van91I	CCANNNNNTGG	1 cut(s)	326
VpaK11BI	GGWCC	3 cut(s)	232, 308, 446
XapI	RAATTY	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.