Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

29298210 .. 29299676

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCACAAGATGGCAAAGTCGCATGTAGTTTCCAATGTCCCTTCTGTAGTTTCCAAGTTACTACTATTGGGTATCCTCATGGCTACCATTACCACAACAGGTGCCCAGATTGGTGTTTGTTATGGAGATGTTGCAGACAACTTACCCCCCGCAAGAGAAGTAATATCACTTTACAACCAAAATAACATCAAAAGGATGAGGATTTATTATCCTAAACGTGATGCTCTCGAAGCTCTTAGAGGCTCCAACATCGAGCTCATGCTTGGTGTCGAAAACGAACGCCTTCAGGCAATTGCTTCTAACCAGGCCAGTGCTGATGACTGGGTCCAAAGAAATGTGGTAGCTTATGGAAATGTCAATATCAAATACCTTGCGGTTGGGAATGAAATAGAATCAGGTCCCTTTGCACAATATGTTGGCCCTGCCATGGAGAAAATCCAAAATGCAATTTCCAGGGCTGGTCTTGCAAACAGAATCAAAGTCTCCACGGCTGTTCATCCTGTAATTCTCCAAGAATCGTACCCTCCATCAAAAGGATCATTCCGGCAGGACCACAGAGCATTTCTTGATCCTGTCATCGGTTTCCTAGTCCGAAATAAATCTCCATTGCTTCTAAATATGTACCCTTACTTTAGCTACATTTCAAACCGAGGAAGCATTAGCCTTCAGTATGCTGTTTTTACATCTCCATCAGTTGTGGTTCAAGATGGACAATATGGCTACCAGAACCTGTTTGATGCACTTCTTGATGCACATTACGCTGCGTTAGAGAAGGCCGGCGGTGGTTCTTTGAGAATAGTAGTATCGGAGACTGGTTGGCCCTCCGCTGGTGGTGATGGTCAAGTAACTACAAAGGAGAATGCGAGAGTTTACAACTCGAATGTGATCAAGCATGTCAAGGGTGGTACACCAAGGAGACCTGGATCTCCAATTGAAACCTACTTGTTTGCCATGTTCAATGAGAACCTAAAACGTGGAGACAGGACTGAGAATAATTTCGGCCTCTTTTACCCAAACAAAAGTCCTGTTTATCCTCCCATCAACTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

351

Amino Acids

38.55

Weight (kDa)

9.34

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	37 - 344	1.3e-105	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	4 cut(s)	150, 374, 780, 825
AclWI	GGATC	3 cut(s)	544, 563, 931
AcuI	CTGAAG	2 cut(s)	269, 650
AfaI	GTAC	3 cut(s)	521, 623, 907
AfiI	CCNNNNNNNGG	4 cut(s)	427, 533, 578, 827
AgsI	TTSAA	5 cut(s)	645, 704, 935, 958, 1048
AjnI	CCWGG	3 cut(s)	303, 452, 919
AluBI	AGCT	4 cut(s)	233, 256, 344, 636
AluI	AGCT	4 cut(s)	233, 256, 344, 636
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	4 cut(s)	487, 803, 910, 972
AlwI	GGATC	3 cut(s)	544, 563, 931
AlwNI	CAGNNNCTG	1 cut(s)	730
AoxI	GGCC	5 cut(s)	306, 418, 774, 818, 1000
ApeKI	GCWGC	1 cut(s)	761
Asp700I	GAANNNNTTC	2 cut(s)	282, 995
AspS9I	GGNCC	5 cut(s)	325, 398, 419, 550, 819
AsuHPI	GGTGA	1 cut(s)	845
AvaII	GGWCC	3 cut(s)	325, 398, 550
BaeGI	GKGCMC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	748
BccI	CCATC	6 cut(s)	4, 535, 697, 701, 830, 1046
BceAI	ACGGC	1 cut(s)	504
BciT130I	CCWGG	3 cut(s)	305, 454, 921
BciVI	GTATCC	1 cut(s)	83
BclI	TGATCA	1 cut(s)	885
BcoDI	GTCTC	4 cut(s)	487, 803, 910, 972
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	763
Bme1390I	CCNGG	3 cut(s)	305, 454, 921
Bme18I	GGWCC	3 cut(s)	325, 398, 550
BmgT120I	GGNCC	5 cut(s)	325, 398, 419, 550, 819
BmiI	GGNNCC	4 cut(s)	103, 244, 326, 400
BmrFI	CCNGG	3 cut(s)	305, 454, 921
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	3 cut(s)	211, 727, 739
BmuI	ACTGGG	1 cut(s)	331
BsaI	GGTCTC	1 cut(s)	910
BsaJI	CCNNGG	5 cut(s)	426, 453, 486, 649, 911
Bsc4I	CCNNNNNNNGG	4 cut(s)	427, 533, 578, 827
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	3 cut(s)	309, 326, 817
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	3 cut(s)	305, 454, 921
BseDI	CCNNGG	5 cut(s)	426, 453, 486, 649, 911
BseGI	GGATG	2 cut(s)	201, 496
BseLI	CCNNNNNNNGG	4 cut(s)	427, 533, 578, 827
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	1 cut(s)	978
BseNI	ACTGG	3 cut(s)	309, 326, 817
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	748
BshFI	GGCC	5 cut(s)	308, 420, 776, 820, 1002
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	544, 777
BslFI	GGGAC	2 cut(s)	23, 384
BslI	CCNNNNNNNGG	4 cut(s)	427, 533, 578, 827
BsmAI	GTCTC	4 cut(s)	487, 803, 910, 972
BsmFI	GGGAC	2 cut(s)	23, 384
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	5 cut(s)	308, 420, 776, 820, 1002
Bso31I	GGTCTC	1 cut(s)	910
Bsp1286I	GDGCHC	2 cut(s)	106, 258
Bsp143I	GATC	4 cut(s)	536, 568, 885, 923
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	4 cut(s)	150, 374, 780, 825
BspANI	GGCC	5 cut(s)	308, 420, 776, 820, 1002
BspCNI	CTCAG	1 cut(s)	979
BspLI	GGNNCC	4 cut(s)	103, 244, 326, 400
BspPI	GGATC	3 cut(s)	544, 563, 931
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	3 cut(s)	309, 326, 817
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	5 cut(s)	426, 453, 486, 649, 911
BssMI	GATC	4 cut(s)	536, 568, 885, 923
BssT1I	CCWWGG	2 cut(s)	426, 911
Bst2UI	CCWGG	3 cut(s)	305, 454, 921
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	2 cut(s)	236, 987
BstDSI	CCRYGG	2 cut(s)	426, 486
BstF5I	GGATG	2 cut(s)	201, 496
BstKTI	GATC	4 cut(s)	539, 571, 888, 926
BstMAI	GTCTC	4 cut(s)	487, 803, 910, 972
BstMBI	GATC	4 cut(s)	536, 568, 885, 923
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 464, 758
BstNI	CCWGG	3 cut(s)	305, 454, 921
BstNSI	RCATGY	2 cut(s)	26, 896
BstSCI	CCNGG	3 cut(s)	303, 452, 919
BstSFI	CTRYAG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	923
BstYI	RGATCY	1 cut(s)	923
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	5 cut(s)	308, 420, 776, 820, 1002
BtgI	CCRYGG	2 cut(s)	426, 486
BtsCI	GGATG	2 cut(s)	201, 496
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	778
CaiI	CAGNNNCTG	1 cut(s)	730
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	5 cut(s)	325, 398, 419, 550, 819
Csp6I	GTAC	3 cut(s)	520, 622, 906
CviAII	CATG	6 cut(s)	23, 79, 259, 427, 893, 952
CviQI	GTAC	3 cut(s)	520, 622, 906
DdeI	CTNAG	2 cut(s)	236, 987
DpnI	GATC	4 cut(s)	538, 570, 887, 925
DpnII	GATC	4 cut(s)	536, 568, 885, 923
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	426, 911
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	910
Eco47I	GGWCC	3 cut(s)	325, 398, 550
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	269, 650
EcoICRI	GAGCTC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	3 cut(s)	303, 452, 919
EcoT14I	CCWWGG	2 cut(s)	426, 911
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	426, 911
FaeI	CATG	6 cut(s)	26, 82, 262, 430, 896, 955
FaqI	GGGAC	2 cut(s)	23, 384
FatI	CATG	6 cut(s)	22, 78, 258, 426, 892, 951
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	885
Fnu4HI	GCNGC	1 cut(s)	762
FokI	GGATG	2 cut(s)	208, 483
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	762
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	1 cut(s)	762
HaeIII	GGCC	5 cut(s)	308, 420, 776, 820, 1002
HapII	CCGG	2 cut(s)	544, 777
Hin1II	CATG	6 cut(s)	26, 82, 262, 430, 896, 955
HinfI	GANTC	3 cut(s)	392, 474, 515
HpaII	CCGG	2 cut(s)	544, 777
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	2 cut(s)	871, 908
Hpy188I	TCNGA	2 cut(s)	593, 808
Hpy188III	TCNNGA	4 cut(s)	227, 566, 704, 746
Hpy8I	GTNNAC	2 cut(s)	871, 908
HpyAV	CCTTC	4 cut(s)	51, 293, 674, 766
HpyCH4IV	ACGT	2 cut(s)	217, 973
HpyCH4V	TGCA	7 cut(s)	4, 134, 407, 446, 467, 740, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 464, 758
HpyF3I	CTNAG	2 cut(s)	236, 987
HpySE526I	ACGT	2 cut(s)	217, 973
Hsp92II	CATG	6 cut(s)	26, 82, 262, 430, 896, 955
KroI	GCCGGC	1 cut(s)	776
KroNI	GCCGGC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	885
Kzo9I	GATC	4 cut(s)	536, 568, 885, 923
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	3 cut(s)	211, 727, 739
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	2 cut(s)	217, 973
MaeIII	GTNAC	2 cut(s)	57, 844
MalI	GATC	4 cut(s)	538, 570, 887, 925
MboI	GATC	4 cut(s)	536, 568, 885, 923
MfeI	CAATTG	2 cut(s)	291, 930
MflI	RGATCY	1 cut(s)	923
MhlI	GDGCHC	2 cut(s)	106, 258
MluCI	AATT	5 cut(s)	291, 447, 504, 930, 994
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	8 cut(s)	86, 192, 233, 534, 644, 832, 1013, 1044
MroNI	GCCGGC	1 cut(s)	776
MroXI	GAANNNNTTC	2 cut(s)	282, 995
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	2 cut(s)	544, 777
MspR9I	CCNGG	3 cut(s)	305, 454, 921
MunI	CAATTG	2 cut(s)	291, 930
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	3 cut(s)	305, 454, 921
MwoI	GCNNNNNNNGC	3 cut(s)	230, 464, 758
NaeI	GCCGGC	1 cut(s)	778
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	4 cut(s)	536, 568, 885, 923
NgoMIV	GCCGGC	1 cut(s)	776
NlaIII	CATG	6 cut(s)	26, 82, 262, 430, 896, 955
NlaIV	GGNNCC	4 cut(s)	103, 244, 326, 400
NspI	RCATGY	2 cut(s)	26, 896
PctI	GAATGC	1 cut(s)	865
PdiI	GCCGGC	1 cut(s)	778
PdmI	GAANNNNTTC	2 cut(s)	282, 995
PfeI	GAWTC	3 cut(s)	392, 474, 515
PflFI	GACNNNGTC	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	763
PpuMI	RGGWCCY	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	3 cut(s)	303, 452, 919
PspGI	CCWGG	3 cut(s)	303, 452, 919
PspN4I	GGNNCC	4 cut(s)	103, 244, 326, 400
PspPI	GGNCC	5 cut(s)	325, 398, 419, 550, 819
PspPPI	RGGWCCY	1 cut(s)	398
PstNI	CAGNNNCTG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	923
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	3 cut(s)	521, 623, 907
RsaNI	GTAC	3 cut(s)	520, 622, 906
SacI	GAGCTC	1 cut(s)	258
SatI	GCNGC	1 cut(s)	762
Sau3AI	GATC	4 cut(s)	536, 568, 885, 923
Sau96I	GGNCC	5 cut(s)	325, 398, 419, 550, 819
ScrFI	CCNGG	3 cut(s)	305, 454, 921
SduI	GDGCHC	2 cut(s)	106, 258
SfaNI	GCATC	3 cut(s)	211, 727, 739
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	3 cut(s)	325, 398, 550
Sse9I	AATT	5 cut(s)	291, 447, 504, 930, 994
SsiI	CCGC	4 cut(s)	150, 374, 780, 825
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	303, 452, 919
StyI	CCWWGG	2 cut(s)	426, 911
TaiI	ACGT	2 cut(s)	220, 976
TaqI	TCGA	4 cut(s)	228, 252, 270, 878
TasI	AATT	5 cut(s)	291, 447, 504, 930, 994
TfiI	GAWTC	3 cut(s)	392, 474, 515
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	1 cut(s)	761
TspDTI	ATGAA	2 cut(s)	399, 485
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	323
VpaK11BI	GGWCC	3 cut(s)	325, 398, 550
XceI	RCATGY	2 cut(s)	26, 896
XmnI	GAANNNNTTC	2 cut(s)	282, 995
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.