Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

65188727 .. 65189900

Gene Structure 1174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTAAGTCCCATGCAGTTGCCAAAGTCCCTTTTGTAGTTCCCAAGTTACTAGTACTATTGGGTATCCTCATGGCTACCTTTACCACAACAGGTGCCCAGGTGGGTGTTTGCTATGGAACTGTCGCAAACAACTTGCCACCCCCACGAGAAGTAATATCACTTTACAACCAATATAACATCAAAAGGATGCGGCTTTATGGTCCTAACCATGATGCTCTCGAAGCTCTTAGAGGCTCCAACATTGAGCTCATGCTTGGTGTAGAAAACGAACGCCTTCGGGATATTTCTTCTAACCAAGCCAGTGCTAATGATTGGGTCCAAAAAAATGTTGTGACCTATGGAAATGTCAATTTCAAGTACATTGCGGTTGGAAATGAAATAGATGCTAAAGGGCCATTAGCACCTTTCGTTGGCCCTGCCATGGAAAAAATTCACAATGCAATTTCGAGGGCCGGTCTTGCAAACAAAATTAAAGTCTCCACGGCCGTTCATCCTGTAATTCTCCAAGAATCCTACCCTCCATCAAAAGGATCATTCAGGCAGGATTACCGACCATTTCTTGATCCTATCATTGGTTTCCTAGTGGGAAATAAATCTCCATTGCTTCTAAATATGTACCCATACTTTAGTTTCATTCAAAACCGAGCAAACATTGACCTTCGATATGCTCTTTTTACATCTCCGTCAGTCGTGGTTCAAGATGGACAATCTGGCTATCAAAATCTGTTTGATGCACTTCTTGATGCACATTACTCCGCTTTAGAGAAGGCTGGGGGTGGTTCTTTGAGAATTGTTGTATCGGAGACTGGTTGGCCCTCTGCTGGTGGTGATGGTCAAGTGACAACAAAGGAGAATGCGAGAATTTACAACTCAAATGTGATCAAGCATGTCAAGGGCGGTACTCCAAAGAGACCTGGAGGTTCGATAGAAACTTACATATTTGCCATGTTCAATGAGAATCAAAAACGTGGAGACAAGACTGAGAATAATTTCGGCCTCTTTTACCCAAGCAAAAATCCGGTTTATCCCATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

349

Amino Acids

38.23

Weight (kDa)

9.39

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	35 - 347	2.1e-108	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AciI	CCGC	4 cut(s)	193, 368, 759, 900
AclWI	GGATC	2 cut(s)	541, 560
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	432, 864
AfaI	GTAC	4 cut(s)	57, 362, 620, 904
AfiI	CCNNNNNNNGG	5 cut(s)	413, 424, 530, 575, 824
AgsI	TTSAA	5 cut(s)	358, 641, 701, 955, 1042
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	99, 916
AluBI	AGCT	2 cut(s)	227, 250
AluI	AGCT	2 cut(s)	227, 250
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	4 cut(s)	484, 800, 907, 969
AlwI	GGATC	2 cut(s)	541, 560
AoxI	GGCC	6 cut(s)	395, 415, 453, 486, 815, 997
ApoI	RAATTY	2 cut(s)	432, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	462, 494
Asp700I	GAANNNNTTC	3 cut(s)	276, 432, 992
AspS9I	GGNCC	6 cut(s)	203, 319, 395, 416, 453, 816
AsuHPI	GGTGA	1 cut(s)	842
AvaII	GGWCC	2 cut(s)	203, 319
BaeGI	GKGCMC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	4 cut(s)	532, 698, 827, 1040
BceAI	ACGGC	2 cut(s)	473, 501
BciT130I	CCWGG	2 cut(s)	101, 918
BciVI	GTATCC	1 cut(s)	77
BclI	TGATCA	1 cut(s)	882
BcoDI	GTCTC	4 cut(s)	484, 800, 907, 969
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	2 cut(s)	53, 584
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	101, 918
Bme18I	GGWCC	2 cut(s)	203, 319
BmgT120I	GGNCC	6 cut(s)	203, 319, 395, 416, 453, 816
BmiI	GGNNCC	3 cut(s)	97, 238, 320
BmrFI	CCNGG	2 cut(s)	101, 918
BmsI	GCATC	5 cut(s)	180, 205, 376, 724, 736
BpmI	CTGGAG	1 cut(s)	939
BsaI	GGTCTC	1 cut(s)	907
BsaJI	CCNNGG	3 cut(s)	99, 423, 483
BsaWI	WCCGGW	1 cut(s)	1021
Bsc4I	CCNNNNNNNGG	5 cut(s)	413, 424, 530, 575, 824
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	303, 814
Bse3DI	GCAATG	2 cut(s)	363, 602
BseBI	CCWGG	2 cut(s)	101, 918
BseDI	CCNNGG	3 cut(s)	99, 423, 483
BseGI	GGATG	2 cut(s)	195, 493
BseLI	CCNNNNNNNGG	5 cut(s)	413, 424, 530, 575, 824
BseMI	GCAATG	2 cut(s)	363, 602
BseMII	CTCAG	1 cut(s)	975
BseNI	ACTGG	2 cut(s)	303, 814
BseSI	GKGCMC	1 cut(s)	100
BseX3I	CGGCCG	1 cut(s)	486
BseYI	CCCAGC	1 cut(s)	773
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	6 cut(s)	397, 417, 455, 488, 817, 999
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	456, 1022
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	5 cut(s)	413, 424, 530, 575, 824
BsmAI	GTCTC	4 cut(s)	484, 800, 907, 969
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	6 cut(s)	397, 417, 455, 488, 817, 999
Bso31I	GGTCTC	1 cut(s)	907
Bsp1286I	GDGCHC	2 cut(s)	100, 252
Bsp143I	GATC	3 cut(s)	533, 565, 882
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	4 cut(s)	193, 368, 759, 900
BspANI	GGCC	6 cut(s)	397, 417, 455, 488, 817, 999
BspCNI	CTCAG	1 cut(s)	976
BspLI	GGNNCC	3 cut(s)	97, 238, 320
BspPI	GGATC	2 cut(s)	541, 560
BspT107I	GGYRCC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	907
BsrDI	GCAATG	2 cut(s)	363, 602
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	303, 814
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	99, 423, 483
BssMI	GATC	3 cut(s)	533, 565, 882
BssSI	CACGAG	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	101, 918
Bst4CI	ACNGT	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	6, 230, 984
BstDSI	CCRYGG	2 cut(s)	423, 483
BstF5I	GGATG	2 cut(s)	195, 493
BstKTI	GATC	3 cut(s)	536, 568, 885
BstMAI	GTCTC	4 cut(s)	484, 800, 907, 969
BstMBI	GATC	3 cut(s)	533, 565, 882
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 461
BstNI	CCWGG	2 cut(s)	101, 918
BstNSI	RCATGY	1 cut(s)	893
BstSCI	CCNGG	2 cut(s)	99, 916
BstSLI	GKGCMC	1 cut(s)	100
BstZI	CGGCCG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	6 cut(s)	397, 417, 455, 488, 817, 999
BtgI	CCRYGG	2 cut(s)	423, 483
BtsCI	GGATG	2 cut(s)	195, 493
BtsIMutI	CAGTG	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	6 cut(s)	203, 319, 395, 416, 453, 816
Csp6I	GTAC	4 cut(s)	56, 361, 619, 903
CviAII	CATG	7 cut(s)	14, 73, 212, 253, 424, 890, 949
CviQI	GTAC	4 cut(s)	56, 361, 619, 903
DdeI	CTNAG	3 cut(s)	6, 230, 984
DpnI	GATC	3 cut(s)	535, 567, 884
DpnII	GATC	3 cut(s)	533, 565, 882
EaeI	YGGCCR	1 cut(s)	486
EagI	CGGCCG	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	250
EclXI	CGGCCG	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	907
Eco47I	GGWCC	2 cut(s)	203, 319
Eco52I	CGGCCG	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	99, 916
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	7 cut(s)	17, 76, 215, 256, 427, 893, 952
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	7 cut(s)	13, 72, 211, 252, 423, 889, 948
FbaI	TGATCA	1 cut(s)	882
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	202, 480
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	2 cut(s)	53, 584
GluI	GCNGC	1 cut(s)	194
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	939
HaeIII	GGCC	6 cut(s)	397, 417, 455, 488, 817, 999
HapII	CCGG	2 cut(s)	456, 1022
Hin1II	CATG	7 cut(s)	17, 76, 215, 256, 427, 893, 952
HinfI	GANTC	2 cut(s)	512, 961
HpaII	CCGG	2 cut(s)	456, 1022
HphI	GGTGA	1 cut(s)	842
Hpy188I	TCNGA	1 cut(s)	805
Hpy188III	TCNNGA	5 cut(s)	221, 281, 563, 701, 743
HpyAV	CCTTC	3 cut(s)	287, 671, 763
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	970
HpyCH4V	TGCA	5 cut(s)	17, 443, 464, 737, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 461
HpyF3I	CTNAG	3 cut(s)	6, 230, 984
HpySE526I	ACGT	1 cut(s)	970
Hsp92II	CATG	7 cut(s)	17, 76, 215, 256, 427, 893, 952
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	3 cut(s)	533, 565, 882
LmnI	GCTCC	1 cut(s)	242
LweI	GCATC	5 cut(s)	180, 205, 376, 724, 736
MaeI	CTAG	2 cut(s)	53, 584
MaeII	ACGT	1 cut(s)	970
MaeIII	GTNAC	3 cut(s)	48, 334, 841
MalI	GATC	3 cut(s)	535, 567, 884
MboI	GATC	3 cut(s)	533, 565, 882
MboII	GAAGA	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	100, 252
MluCI	AATT	9 cut(s)	352, 432, 444, 471, 501, 792, 864, 991, 1036
MmeI	TCCRAC	2 cut(s)	264, 352
MnlI	CCTC	7 cut(s)	80, 227, 444, 531, 829, 914, 1010
MroXI	GAANNNNTTC	3 cut(s)	276, 432, 992
MseI	TTAA	1 cut(s)	474
MspI	CCGG	2 cut(s)	456, 1022
MspR9I	CCNGG	2 cut(s)	101, 918
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	2 cut(s)	101, 918
MwoI	GCNNNNNNNGC	2 cut(s)	224, 461
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	3 cut(s)	533, 565, 882
NlaIII	CATG	7 cut(s)	17, 76, 215, 256, 427, 893, 952
NlaIV	GGNNCC	3 cut(s)	97, 238, 320
NmuCI	GTSAC	2 cut(s)	334, 841
NspI	RCATGY	1 cut(s)	893
PctI	GAATGC	1 cut(s)	862
PdmI	GAANNNNTTC	3 cut(s)	276, 432, 992
PfeI	GAWTC	2 cut(s)	512, 961
PkrI	GCNGC	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	99, 916
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	2 cut(s)	99, 916
PspN4I	GGNNCC	3 cut(s)	97, 238, 320
PspPI	GGNCC	6 cut(s)	203, 319, 395, 416, 453, 816
RsaI	GTAC	4 cut(s)	57, 362, 620, 904
RsaNI	GTAC	4 cut(s)	56, 361, 619, 903
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	3 cut(s)	533, 565, 882
Sau96I	GGNCC	6 cut(s)	203, 319, 395, 416, 453, 816
ScaI	AGTACT	1 cut(s)	57
ScrFI	CCNGG	2 cut(s)	101, 918
SduI	GDGCHC	2 cut(s)	100, 252
SfaNI	GCATC	5 cut(s)	180, 205, 376, 724, 736
SinI	GGWCC	2 cut(s)	203, 319
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	9 cut(s)	352, 432, 444, 471, 501, 792, 864, 991, 1036
SsiI	CCGC	4 cut(s)	193, 368, 759, 900
SspMI	CTAG	2 cut(s)	53, 584
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	99, 916
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	973
TaqI	TCGA	4 cut(s)	222, 449, 664, 926
TasI	AATT	9 cut(s)	352, 432, 444, 471, 501, 792, 864, 991, 1036
TatI	WGTACW	2 cut(s)	55, 360
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	512, 961
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	334, 841
Tsp45I	GTSAC	2 cut(s)	334, 841
TspDTI	ATGAA	3 cut(s)	393, 482, 625
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	203, 319
XapI	RAATTY	2 cut(s)	432, 864
XceI	RCATGY	1 cut(s)	893
XmnI	GAANNNNTTC	3 cut(s)	276, 432, 992
XspI	CTAG	2 cut(s)	53, 584
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.