Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

7362559 .. 7364114

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTCGAGTCGTCCAATTTAATTGGGAAAAGCCCTCCCATGGTTTCCATAATGCTACTTGTTGTTGGTCTGCTAATGGCTACCCTTACCACTAAGGGAGCAAGCATTGGTGTTTGTTATGGAACACTTGGAAACTTGCCACCCCCAGGAGAAGTAATAGCTCTGTACAAACAATATAACATCCAAAAACTACGGCTCTATGCTCCTAACGACGACGCTCTCCGAGCCCTTCAAGGCTCCACCATCGAGGTCATGCTAGGCATCGAAAATGAGCGTCTTCAAGACATTTCTTCTAACCAAGCCAGTGCAGATGATTGGGTTCAAAGAAATGTCAAAAGCTATCCGAATGTCAATTTCAAATACATCGCCGTTGGAAACGAAGTAGATGCCCTGGGTAACCGAGCACCGTATGTTGGCCCTGCAATGGACAACATTCAAAATGCAATTTCTAGGGCTGGTCTTGTAAACCAAATCAAAGTCTCCACTGCCGTTTTTCCTATAATTCTCCAGGAATCATTTCCTCCATCAAAAGGCTTATTCCGGCCGGATTATAGACCATTTCTCGATCCTATCATAAGCTTCCTAGTCAGAAACCAATCGCCTTTACTTGTTAACATGTACCCATATTTTAGTTACATTCAAAATAGTCAGAAGATTAAACTCGAGTACGCCCTTTTTACATCTCCATCGGTTGTAGTCAATGACGGTCGGCTTGGGTATCAAAACCTGTTTGATGCAATTCTAGATGCGCATTACTCAGCATTAGAGAAGGCTGGAGGCGGCTCTCTGAAAATTGTTGTATCGGAGACTGGTTGGCCCTCGGCTGGCGGAGATGAGCGAGTGACAACGACAGCGAATGCAAGAATTTACAACTCAAATTTGATTAAACATGTCAAGGGTGGGACTCCGAAGAAACCTGAAAGCCCCATAGACACTTACGTGTTTGCCATGTTTGATGAGAACCAAAAACGTGGAGAAGAGACCGAGAGACACTGGGGGCTCTTCTTTCCAAACAAACAGCCTAAATATACCATTGATTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

349

Amino Acids

38.49

Weight (kDa)

7.71

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	36 - 347	6.8e-107	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	750
AciI	CCGC	2 cut(s)	780, 828
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	542
AcsI	RAATTY	2 cut(s)	864, 877
AfaI	GTAC	3 cut(s)	167, 620, 668
AfiI	CCNNNNNNNGG	6 cut(s)	40, 146, 413, 424, 530, 824
AflIII	ACRYGT	3 cut(s)	615, 889, 939
AgsI	TTSAA	6 cut(s)	233, 281, 323, 358, 437, 641
AjnI	CCWGG	3 cut(s)	145, 390, 507
AleI	CACNNNNGTG	1 cut(s)	938
AluBI	AGCT	3 cut(s)	161, 339, 579
AluI	AGCT	3 cut(s)	161, 339, 579
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	4 cut(s)	484, 800, 974, 982
AlwI	GGATC	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	3 cut(s)	415, 542, 815
ApoI	RAATTY	2 cut(s)	864, 877
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	751
AspS9I	GGNCC	2 cut(s)	416, 816
AvaI	CYCGRG	1 cut(s)	662
BanII	GRGCYC	2 cut(s)	229, 1002
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	406
BccI	CCATC	3 cut(s)	251, 532, 694
BceAI	ACGGC	3 cut(s)	209, 353, 473
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	3 cut(s)	147, 392, 509
BcoDI	GTCTC	4 cut(s)	484, 800, 974, 982
BfaI	CTAG	4 cut(s)	257, 450, 584, 743
BisI	GCNGC	1 cut(s)	781
BlsI	GCNGC	1 cut(s)	782
Bme1390I	CCNGG	3 cut(s)	147, 392, 509
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	2 cut(s)	416, 816
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	3 cut(s)	147, 392, 509
BmrI	ACTGGG	1 cut(s)	1003
BmsI	GCATC	4 cut(s)	270, 376, 724, 736
BmuI	ACTGGG	1 cut(s)	1003
BpiI	GAAGAC	1 cut(s)	269
BpmI	CTGGAG	2 cut(s)	491, 795
BsaAI	YACGTR	1 cut(s)	940
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	5 cut(s)	39, 145, 390, 391, 819
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 146, 413, 424, 530, 824
Bse1I	ACTGG	3 cut(s)	303, 814, 998
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	147, 392, 509
BseDI	CCNNGG	5 cut(s)	39, 145, 390, 391, 819
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	6 cut(s)	40, 146, 413, 424, 530, 824
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	3 cut(s)	303, 814, 998
BseX3I	CGGCCG	1 cut(s)	542
BsgI	GTGCAG	1 cut(s)	327
Bsh1285I	CGRYCG	2 cut(s)	545, 709
BshFI	GGCC	3 cut(s)	417, 544, 817
BsiEI	CGRYCG	2 cut(s)	545, 709
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	2 cut(s)	541, 545
BslFI	GGGAC	1 cut(s)	916
BslI	CCNNNNNNNGG	6 cut(s)	40, 146, 413, 424, 530, 824
BsmAI	GTCTC	4 cut(s)	484, 800, 974, 982
BsmFI	GGGAC	1 cut(s)	916
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	3 cut(s)	417, 544, 817
Bso31I	GGTCTC	1 cut(s)	974
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	3 cut(s)	229, 406, 1002
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	565
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	780, 828
BspANI	GGCC	3 cut(s)	417, 544, 817
BspCNI	CTCAG	1 cut(s)	770
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	1007
BspTNI	GGTCTC	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	303, 814, 998
BssECI	CCNNGG	5 cut(s)	39, 145, 390, 391, 819
BssMI	GATC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	3 cut(s)	147, 392, 509
Bst4CI	ACNGT	2 cut(s)	408, 707
Bst6I	CTCTTC	2 cut(s)	972, 1007
BstAUI	TGTACA	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	940
BstC8I	GCNNGC	2 cut(s)	103, 826
BstDEI	CTNAG	2 cut(s)	93, 757
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	4 cut(s)	484, 800, 974, 982
BstMBI	GATC	1 cut(s)	565
BstMCI	CGRYCG	2 cut(s)	545, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	3 cut(s)	147, 392, 509
BstNSI	RCATGY	2 cut(s)	619, 893
BstPI	GGTNACC	1 cut(s)	395
BstSCI	CCNGG	3 cut(s)	145, 390, 507
BstV2I	GAAGAC	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	971
BstZI	CGGCCG	1 cut(s)	542
BsuRI	GGCC	3 cut(s)	417, 544, 817
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	310, 483, 991
Cac8I	GCNNGC	2 cut(s)	103, 826
CfoI	GCGC	1 cut(s)	751
Cfr13I	GGNCC	2 cut(s)	416, 816
CseI	GACGC	2 cut(s)	224, 263
Csp6I	GTAC	3 cut(s)	166, 619, 667
CviAII	CATG	5 cut(s)	40, 253, 616, 890, 949
CviQI	GTAC	3 cut(s)	166, 619, 667
DdeI	CTNAG	2 cut(s)	93, 757
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	542
EagI	CGGCCG	1 cut(s)	542
Eam1104I	CTCTTC	2 cut(s)	972, 1007
EarI	CTCTTC	2 cut(s)	972, 1007
EciI	GGCGGA	1 cut(s)	843
EclXI	CGGCCG	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	229, 1002
Eco31I	GGTCTC	1 cut(s)	974
Eco52I	CGGCCG	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	662
Eco91I	GGTNACC	1 cut(s)	395
EcoO65I	GGTNACC	1 cut(s)	395
EcoRII	CCWGG	3 cut(s)	145, 390, 507
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	229, 1002
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	5 cut(s)	43, 256, 619, 893, 952
FaqI	GGGAC	1 cut(s)	916
FatI	CATG	5 cut(s)	39, 252, 615, 889, 948
Fnu4HI	GCNGC	1 cut(s)	781
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	2 cut(s)	229, 1002
Fsp4HI	GCNGC	1 cut(s)	781
FspAI	RTGCGCAY	1 cut(s)	750
FspBI	CTAG	4 cut(s)	257, 450, 584, 743
FspI	TGCGCA	1 cut(s)	750
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	1 cut(s)	781
GsuI	CTGGAG	2 cut(s)	491, 795
HaeIII	GGCC	3 cut(s)	417, 544, 817
HapII	CCGG	2 cut(s)	541, 545
HgaI	GACGC	2 cut(s)	224, 263
HhaI	GCGC	1 cut(s)	751
Hin1II	CATG	5 cut(s)	43, 256, 619, 893, 952
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	3 cut(s)	8, 512, 904
HpaI	GTTAAC	1 cut(s)	613
HpaII	CCGG	2 cut(s)	541, 545
Hpy166II	GTNNAC	2 cut(s)	466, 613
Hpy188I	TCNGA	7 cut(s)	224, 345, 590, 651, 789, 805, 909
Hpy188III	TCNNGA	3 cut(s)	281, 563, 743
Hpy8I	GTNNAC	2 cut(s)	466, 613
Hpy99I	CGWCG	2 cut(s)	215, 218
HpyAV	CCTTC	2 cut(s)	239, 763
HpyCH4III	ACNGT	2 cut(s)	408, 707
HpyCH4IV	ACGT	2 cut(s)	939, 970
HpyCH4V	TGCA	5 cut(s)	308, 422, 443, 737, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	93, 757
HpySE526I	ACGT	2 cut(s)	939, 970
Hsp92II	CATG	5 cut(s)	43, 256, 619, 893, 952
HspAI	GCGC	1 cut(s)	749
KspAI	GTTAAC	1 cut(s)	613
Kzo9I	GATC	1 cut(s)	565
LguI	GCTCTTC	1 cut(s)	1007
LmnI	GCTCC	3 cut(s)	98, 208, 242
LweI	GCATC	4 cut(s)	270, 376, 724, 736
MaeI	CTAG	4 cut(s)	257, 450, 584, 743
MaeII	ACGT	2 cut(s)	939, 970
MaeIII	GTNAC	3 cut(s)	395, 632, 841
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	6 cut(s)	269, 282, 664, 922, 989, 994
MhlI	GDGCHC	3 cut(s)	229, 406, 1002
MlyI	GAGTC	2 cut(s)	17, 898
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	5 cut(s)	45, 241, 531, 770, 829
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	6 cut(s)	20, 612, 657, 885, 1041, 1045
MslI	CAYNNNNRTG	1 cut(s)	938
MspI	CCGG	2 cut(s)	541, 545
MspR9I	CCNGG	3 cut(s)	147, 392, 509
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	3 cut(s)	147, 392, 509
MwoI	GCNNNNNNNGC	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	43, 256, 619, 893, 952
NlaIV	GGNNCC	1 cut(s)	238
NmeAIII	GCCGAG	1 cut(s)	800
NmuCI	GTSAC	1 cut(s)	841
NsbI	TGCGCA	1 cut(s)	750
NspI	RCATGY	2 cut(s)	619, 893
OliI	CACNNNNGTG	1 cut(s)	938
PacI	TTAATTAA	1 cut(s)	1045
PaeR7I	CTCGAG	1 cut(s)	662
PasI	CCCWGGG	1 cut(s)	391
PciI	ACATGT	2 cut(s)	615, 889
PciSI	GCTCTTC	1 cut(s)	1007
PctI	GAATGC	1 cut(s)	862
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	512
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	1 cut(s)	782
PleI	GAGTC	2 cut(s)	16, 898
PpsI	GAGTC	2 cut(s)	16, 898
Ppu21I	YACGTR	1 cut(s)	940
PscI	ACATGT	2 cut(s)	615, 889
Psp6I	CCWGG	3 cut(s)	145, 390, 507
PspEI	GGTNACC	1 cut(s)	395
PspGI	CCWGG	3 cut(s)	145, 390, 507
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	416, 816
PspXI	VCTCGAGB	1 cut(s)	662
RsaI	GTAC	3 cut(s)	167, 620, 668
RsaNI	GTAC	3 cut(s)	166, 619, 667
RseI	CAYNNNNRTG	1 cut(s)	938
SapI	GCTCTTC	1 cut(s)	1007
SaqAI	TTAA	6 cut(s)	20, 612, 657, 885, 1041, 1045
SatI	GCNGC	1 cut(s)	781
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	2 cut(s)	416, 816
SchI	GAGTC	2 cut(s)	17, 898
ScrFI	CCNGG	3 cut(s)	147, 392, 509
SduI	GDGCHC	3 cut(s)	229, 406, 1002
SetI	ASST	8 cut(s)	163, 252, 341, 581, 729, 919, 942, 973
SfaNI	GCATC	4 cut(s)	270, 376, 724, 736
Sfr274I	CTCGAG	1 cut(s)	662
SlaI	CTCGAG	1 cut(s)	662
SmiMI	CAYNNNNRTG	1 cut(s)	938
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SsiI	CCGC	2 cut(s)	780, 828
SspMI	CTAG	4 cut(s)	257, 450, 584, 743
StyD4I	CCNGG	3 cut(s)	145, 390, 507
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	408, 707
TaiI	ACGT	2 cut(s)	942, 973
TaqI	TCGA	5 cut(s)	6, 246, 264, 564, 663
TaqII	GACCGA	1 cut(s)	998
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	6 cut(s)	20, 612, 657, 885, 1041, 1045
Tru9I	TTAA	6 cut(s)	20, 612, 657, 885, 1041, 1045
TscAI	CASTG	3 cut(s)	310, 490, 998
TseFI	GTSAC	1 cut(s)	841
Tsp45I	GTSAC	1 cut(s)	841
TspRI	CASTG	3 cut(s)	310, 490, 998
XapI	RAATTY	2 cut(s)	864, 877
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	2 cut(s)	619, 893
XhoI	CTCGAG	1 cut(s)	662
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	4 cut(s)	257, 450, 584, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.