Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

18714139 .. 18715923

Gene Structure 1785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCTTCTTTTCTTAGCTTTTCTACTTCACTCTACAATGGCAAAGTCCAATAGACTTGCCGAAAGCCCTTCCATGATCCCGAAAATGCTACTTTTTGGTACGCTAGTAATGGCTTCCATAGCAACAACTGCAGGTTCTAAGATTGGAGTGTGTTATGGAACCAAAGGAGACAACTTACCGCCAGCACAAGAAGTAATATCTATGTTCGACCAGTATGGTATTCAAAAAATTCGTCTCTATGATCCTTACCAAGGTGCTCTCCAAGCCCTTAGAGGCTCCAACATCGAGGTCATGCTTGGTGTTGAGAACGACCGCCTCCAATACATTTCTTCAAGCCAAGACGAGGCTAATTCCTGGGTCCAAAGTAATGTCGTAAGCTATGGCAATGTAAATTTCAAATACATTGTTGTGGGAAACGAAATAGATCCCACAGGTCCACAAGCATCGTTTGTTGCCCCTGCAATGGAAAACATTCAAAAAGCAATTACTGCTGAGAATCTTGCCGGAAAGATCAAAGTCTCCACTGCCATTTCCACCGCTGTCCTTGAAGAACCCTCTTACCCTCCATCAAAAGGATCATTCCGTATTGACCATTTACCATTTCTTAATCCCATCTTGGCCTTCTTAGCACGCAATCAATCTCCCTTGCTCGTTCATGTTTACCCTTATTTTACTTACAATCAAAACCGTCAGATTAATATCGAGTATGCTCTTTTTACATCTCCATCACCTGTGGTGCATGATGGCCAGCTCGGGTATCAAAACCTGTTTGATGCCATTCTCGATACAGTTTACTCAGCACTCGAGAGAGCCGGAAGCGGTTCCGTGAGTATCCTTGTATCGGAGTCCGGTTGGCCCTCCGCTGGTGGGGATGGAGAGGTGACTACAATGGCGAATGCAAGGATTTACAACTCCAATTTGATCAATCATGTCAAGAGTAATGGTACTCCGAAGAAACCTGGAAGCCCTATAGAGGCTTATATATTTGCCATGTTTAATGAAAATCAAAAGCCAGGGCCAGAGACTGAGAGACACTGGGGGCTCTTCTACCCAACCAAACAGCCTAAATATCCCATTGATTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

363

Amino Acids

39.73

Weight (kDa)

5.9

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	48 - 361	9.3e-105	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AciI	CCGC	5 cut(s)	179, 313, 537, 819, 861
AclWI	GGATC	4 cut(s)	70, 236, 419, 583
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	2 cut(s)	228, 391
AfaI	GTAC	2 cut(s)	100, 946
AfiI	CCNNNNNNNGG	8 cut(s)	251, 343, 463, 572, 841, 863, 867, 973
AgsI	TTSAA	6 cut(s)	224, 333, 397, 476, 548, 1084
AjnI	CCWGG	3 cut(s)	353, 958, 1012
AluBI	AGCT	3 cut(s)	17, 378, 751
AluI	AGCT	3 cut(s)	17, 378, 751
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	5 cut(s)	162, 239, 523, 1016, 1024
AlwI	GGATC	4 cut(s)	70, 236, 419, 583
AlwNI	CAGNNNCTG	1 cut(s)	1025
Ama87I	CYCGRG	2 cut(s)	752, 803
AoxI	GGCC	4 cut(s)	618, 745, 854, 1016
ApoI	RAATTY	2 cut(s)	228, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
AseI	ATTAAT	1 cut(s)	696
Asp700I	GAANNNNTTC	2 cut(s)	471, 820
AspS9I	GGNCC	4 cut(s)	358, 434, 855, 1016
AsuHPI	GGTGA	2 cut(s)	720, 892
AvaI	CYCGRG	2 cut(s)	752, 803
AvaII	GGWCC	2 cut(s)	358, 434
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BalI	TGGCCA	1 cut(s)	747
BanII	GRGCYC	1 cut(s)	1044
Bbv12I	GWGCWC	1 cut(s)	259
BccI	CCATC	5 cut(s)	574, 620, 733, 737, 866
BciT130I	CCWGG	3 cut(s)	355, 960, 1014
BciVI	GTATCC	1 cut(s)	842
BclI	TGATCA	1 cut(s)	921
BcoDI	GTCTC	5 cut(s)	162, 239, 523, 1016, 1024
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	2 cut(s)	129, 969
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	842
Bme1390I	CCNGG	3 cut(s)	355, 960, 1014
Bme18I	GGWCC	2 cut(s)	358, 434
BmeT110I	CYCGRG	2 cut(s)	752, 803
BmgT120I	GGNCC	4 cut(s)	358, 434, 855, 1016
BmiI	GGNNCC	4 cut(s)	160, 277, 359, 823
BmrFI	CCNGG	3 cut(s)	355, 960, 1014
BmrI	ACTGGG	1 cut(s)	1045
BmsI	GCATC	2 cut(s)	452, 763
BmuI	ACTGGG	1 cut(s)	1045
BsaBI	GATNNNNATC	1 cut(s)	698
BsaJI	CCNNGG	3 cut(s)	250, 354, 1013
BsaWI	WCCGGW	1 cut(s)	848
Bsc4I	CCNNNNNNNGG	8 cut(s)	251, 343, 463, 572, 841, 863, 867, 973
Bse1I	ACTGG	2 cut(s)	211, 1040
Bse3DI	GCAATG	2 cut(s)	391, 468
Bse8I	GATNNNNATC	1 cut(s)	698
BseBI	CCWGG	3 cut(s)	355, 960, 1014
BseDI	CCNNGG	3 cut(s)	250, 354, 1013
BseGI	GGATG	1 cut(s)	877
BseJI	GATNNNNATC	1 cut(s)	698
BseLI	CCNNNNNNNGG	8 cut(s)	251, 343, 463, 572, 841, 863, 867, 973
BseMI	GCAATG	2 cut(s)	391, 468
BseMII	CTCAG	3 cut(s)	483, 810, 1017
BseNI	ACTGG	2 cut(s)	211, 1040
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	4 cut(s)	620, 747, 856, 1018
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	2 cut(s)	752, 803
BsiSI	CCGG	3 cut(s)	504, 813, 849
BslI	CCNNNNNNNGG	8 cut(s)	251, 343, 463, 572, 841, 863, 867, 973
BsmAI	GTCTC	5 cut(s)	162, 239, 523, 1016, 1024
BsmBI	CGTCTC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	4 cut(s)	620, 747, 856, 1018
BsoBI	CYCGRG	2 cut(s)	752, 803
Bsp1286I	GDGCHC	2 cut(s)	259, 1044
Bsp143I	GATC	6 cut(s)	75, 241, 424, 510, 575, 921
BspACI	CCGC	5 cut(s)	179, 313, 537, 819, 861
BspANI	GGCC	4 cut(s)	620, 747, 856, 1018
BspCNI	CTCAG	3 cut(s)	484, 809, 1018
BspLI	GGNNCC	4 cut(s)	160, 277, 359, 823
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	4 cut(s)	70, 236, 419, 583
BspQI	GCTCTTC	1 cut(s)	1049
BsrDI	GCAATG	2 cut(s)	391, 468
BsrI	ACTGG	2 cut(s)	211, 1040
BssECI	CCNNGG	3 cut(s)	250, 354, 1013
BssMI	GATC	6 cut(s)	75, 241, 424, 510, 575, 921
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	3 cut(s)	355, 960, 1014
Bst4CI	ACNGT	2 cut(s)	689, 790
Bst6I	CTCTTC	1 cut(s)	1049
BstAPI	GCANNNNNTGC	2 cut(s)	128, 488
BstC8I	GCNNGC	3 cut(s)	183, 631, 749
BstDEI	CTNAG	7 cut(s)	13, 138, 269, 492, 625, 796, 1026
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	877
BstKTI	GATC	6 cut(s)	78, 244, 427, 513, 578, 924
BstMAI	GTCTC	5 cut(s)	162, 239, 523, 1016, 1024
BstMBI	GATC	6 cut(s)	75, 241, 424, 510, 575, 921
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 128, 263, 488, 626
BstNI	CCWGG	3 cut(s)	355, 960, 1014
BstSCI	CCNGG	3 cut(s)	353, 958, 1012
BstSFI	CTRYAG	2 cut(s)	129, 969
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	842
BsuRI	GGCC	4 cut(s)	620, 747, 856, 1018
BtsCI	GGATG	1 cut(s)	877
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	522, 1033
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	183, 631, 749
CaiI	CAGNNNCTG	1 cut(s)	1025
Cfr13I	GGNCC	4 cut(s)	358, 434, 855, 1016
Csp6I	GTAC	2 cut(s)	99, 945
CviAII	CATG	6 cut(s)	73, 292, 656, 740, 929, 991
CviQI	GTAC	2 cut(s)	99, 945
DdeI	CTNAG	7 cut(s)	13, 138, 269, 492, 625, 796, 1026
DpnI	GATC	6 cut(s)	77, 243, 426, 512, 577, 923
DpnII	GATC	6 cut(s)	75, 241, 424, 510, 575, 921
EaeI	YGGCCR	1 cut(s)	745
Eam1104I	CTCTTC	1 cut(s)	1049
EarI	CTCTTC	1 cut(s)	1049
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	1044
Eco47I	GGWCC	2 cut(s)	358, 434
Eco88I	CYCGRG	2 cut(s)	752, 803
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoRII	CCWGG	3 cut(s)	353, 958, 1012
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	1044
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	6 cut(s)	76, 295, 659, 743, 932, 994
FatI	CATG	6 cut(s)	72, 291, 655, 739, 928, 990
FbaI	TGATCA	1 cut(s)	921
FokI	GGATG	1 cut(s)	884
FriOI	GRGCYC	1 cut(s)	1044
FspBI	CTAG	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	620, 747, 856, 1018
HapII	CCGG	3 cut(s)	504, 813, 849
Hin1II	CATG	6 cut(s)	76, 295, 659, 743, 932, 994
HinfI	GANTC	2 cut(s)	496, 845
HpaII	CCGG	3 cut(s)	504, 813, 849
HphI	GGTGA	2 cut(s)	720, 892
Hpy166II	GTNNAC	3 cut(s)	437, 661, 793
Hpy188I	TCNGA	3 cut(s)	693, 844, 951
Hpy188III	TCNNGA	4 cut(s)	79, 782, 805, 934
Hpy8I	GTNNAC	3 cut(s)	437, 661, 793
HpyAV	CCTTC	2 cut(s)	78, 631
HpyCH4III	ACNGT	2 cut(s)	689, 790
HpyCH4V	TGCA	4 cut(s)	131, 461, 739, 899
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 128, 263, 488, 626
HpyF3I	CTNAG	7 cut(s)	13, 138, 269, 492, 625, 796, 1026
Hsp92II	CATG	6 cut(s)	76, 295, 659, 743, 932, 994
Ksp22I	TGATCA	1 cut(s)	921
Kzo9I	GATC	6 cut(s)	75, 241, 424, 510, 575, 921
LguI	GCTCTTC	1 cut(s)	1049
LmnI	GCTCC	1 cut(s)	281
LweI	GCATC	2 cut(s)	452, 763
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	880
MalI	GATC	6 cut(s)	77, 243, 426, 512, 577, 923
MboI	GATC	6 cut(s)	75, 241, 424, 510, 575, 921
MboII	GAAGA	4 cut(s)	321, 560, 964, 1036
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	259, 1044
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	5 cut(s)	228, 349, 391, 483, 916
MluNI	TGGCCA	1 cut(s)	747
MlyI	GAGTC	1 cut(s)	854
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	266, 280, 326, 337, 565, 573, 868, 871, 967
Mox20I	TGGCCA	1 cut(s)	747
MroXI	GAANNNNTTC	2 cut(s)	471, 820
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	3 cut(s)	606, 696, 996
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	747
MspA1I	CMGCKG	2 cut(s)	539, 863
MspI	CCGG	3 cut(s)	504, 813, 849
MspR9I	CCNGG	3 cut(s)	355, 960, 1014
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	3 cut(s)	355, 960, 1014
MwoI	GCNNNNNNNGC	5 cut(s)	119, 128, 263, 488, 626
NdeII	GATC	6 cut(s)	75, 241, 424, 510, 575, 921
NlaIII	CATG	6 cut(s)	76, 295, 659, 743, 932, 994
NlaIV	GGNNCC	4 cut(s)	160, 277, 359, 823
NmuCI	GTSAC	1 cut(s)	880
PaeR7I	CTCGAG	1 cut(s)	803
PciSI	GCTCTTC	1 cut(s)	1049
PctI	GAATGC	1 cut(s)	901
PdmI	GAANNNNTTC	2 cut(s)	471, 820
PfeI	GAWTC	1 cut(s)	496
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
PshBI	ATTAAT	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	353, 958, 1012
PspGI	CCWGG	3 cut(s)	353, 958, 1012
PspN4I	GGNNCC	4 cut(s)	160, 277, 359, 823
PspPI	GGNCC	4 cut(s)	358, 434, 855, 1016
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	1025
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	2 cut(s)	100, 946
RsaNI	GTAC	2 cut(s)	99, 945
RseI	CAYNNNNRTG	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	1049
SaqAI	TTAA	3 cut(s)	606, 696, 996
Sau3AI	GATC	6 cut(s)	75, 241, 424, 510, 575, 921
Sau96I	GGNCC	4 cut(s)	358, 434, 855, 1016
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	3 cut(s)	355, 960, 1014
SduI	GDGCHC	2 cut(s)	259, 1044
SfaNI	GCATC	2 cut(s)	452, 763
SfcI	CTRYAG	2 cut(s)	129, 969
Sfr274I	CTCGAG	1 cut(s)	803
SinI	GGWCC	2 cut(s)	358, 434
SlaI	CTCGAG	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	5 cut(s)	228, 349, 391, 483, 916
SsiI	CCGC	5 cut(s)	179, 313, 537, 819, 861
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	353, 958, 1012
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	689, 790
TaqI	TCGA	5 cut(s)	207, 285, 702, 783, 804
TasI	AATT	5 cut(s)	228, 349, 391, 483, 916
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	3 cut(s)	606, 696, 996
Tru9I	TTAA	3 cut(s)	606, 696, 996
TscAI	CASTG	2 cut(s)	529, 1040
TseFI	GTSAC	1 cut(s)	880
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	2 cut(s)	644, 1014
TspGWI	ACGGA	2 cut(s)	572, 814
TspRI	CASTG	2 cut(s)	529, 1040
VpaK11BI	GGWCC	2 cut(s)	358, 434
VspI	ATTAAT	1 cut(s)	696
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	2 cut(s)	228, 391
XhoI	CTCGAG	1 cut(s)	803
XmnI	GAANNNNTTC	2 cut(s)	471, 820
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.