Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

62510180 .. 62512751

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG461800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCGGCTTTATGGTCCTAACCATGATGCTCTCGAAGCTCTTAGAGGCTCCAACATTGAGCTCATGCTTGGTGTCGAAAACGAACGCCTTCGGGATATTTCTTCTAACCAAGCCAGTGCTGATGATTGGGTCCAAAAAAATGTTGTGACCTATGGAAATGTCAATTTCAAGTACATTGCGGTTGGAAATGAAATAGATGCTAAAGGGCAATTAGCACCATTTGTTGGCCCTGCCATGGAAAAAATTCACAATGCAATTTCGAGGGCTGGTCTTGCAAACAAAATTAAAGTCTCCACGGCCGTTCATCCTGTAATTCTCCAAGAATCCTACCCTCCATCAAAAGGATCATTCAGGCAGGATTACCGACCATTTCTTGATCCTATCATTGGTTTCCTAGTGGGAAATAAATCTCCATTGCTTCTAAATATGTACCCATACTTTAGTTTCATTCAAAACCGAGCAAACATTGACCTTCGATATGCTCTTTTTACATCTCCGTCAGTCGTGGTTCAAGATGGACAATCTGGCTATCAAAATCTGTTTGATGCAATTCTTGATGCACATTACTCCGCTTTAGAGAAGGCTGGGGGTGGTTCTTTGAGAATTGTTGTATCGGAGACTGGTTGGCCCTCTGCTGGTGGTGATCGTCAAGTGACAACAAAGGAAAATGCGAGAATTTACAACTCAAATGTGATCAAGCATGTCAAGGGCGGTACTCCAAAGAGACCTGGCGGTTCGATAGAAACCTACATATTTGCCATGTTCAATGAGAATCAAAAACCTGGAGACGAGACTGAGAAAAATTTCGGCCTCTTTTACCCAAGCAAAAATCCGGTTTATCCCATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

285

Amino Acids

31.52

Weight (kDa)

8.55

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 284	4.3e-98	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AciI	CCGC	5 cut(s)	4, 179, 570, 711, 732
AclWI	GGATC	2 cut(s)	352, 371
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	3 cut(s)	243, 675, 802
AfaI	GTAC	3 cut(s)	173, 431, 715
AfiI	CCNNNNNNNGG	5 cut(s)	224, 235, 341, 386, 635
AgsI	TTSAA	5 cut(s)	169, 452, 512, 766, 853
AjnI	CCWGG	2 cut(s)	727, 781
AluBI	AGCT	2 cut(s)	38, 61
AluI	AGCT	2 cut(s)	38, 61
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	5 cut(s)	295, 611, 718, 780, 785
AlwI	GGATC	2 cut(s)	352, 371
AoxI	GGCC	4 cut(s)	226, 297, 626, 808
ApoI	RAATTY	3 cut(s)	243, 675, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
Asp700I	GAANNNNTTC	3 cut(s)	87, 243, 803
AspS9I	GGNCC	4 cut(s)	14, 130, 227, 627
AsuHPI	GGTGA	1 cut(s)	653
AvaII	GGWCC	2 cut(s)	14, 130
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	3 cut(s)	343, 509, 851
BceAI	ACGGC	2 cut(s)	284, 312
BciT130I	CCWGG	2 cut(s)	729, 783
BclI	TGATCA	1 cut(s)	693
BcoDI	GTCTC	5 cut(s)	295, 611, 718, 780, 785
BfaI	CTAG	1 cut(s)	395
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	729, 783
Bme18I	GGWCC	2 cut(s)	14, 130
BmgT120I	GGNCC	4 cut(s)	14, 130, 227, 627
BmiI	GGNNCC	2 cut(s)	49, 131
BmrFI	CCNGG	2 cut(s)	729, 783
BmsI	GCATC	4 cut(s)	16, 187, 535, 547
BpmI	CTGGAG	1 cut(s)	804
BsaI	GGTCTC	1 cut(s)	718
BsaJI	CCNNGG	2 cut(s)	234, 294
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 235, 341, 386, 635
Bse1I	ACTGG	2 cut(s)	114, 625
Bse3DI	GCAATG	2 cut(s)	174, 413
BseBI	CCWGG	2 cut(s)	729, 783
BseDI	CCNNGG	2 cut(s)	234, 294
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	5 cut(s)	224, 235, 341, 386, 635
BseMI	GCAATG	2 cut(s)	174, 413
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	2 cut(s)	114, 625
BseX3I	CGGCCG	1 cut(s)	297
BseYI	CCCAGC	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	4 cut(s)	228, 299, 628, 810
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	833
BslI	CCNNNNNNNGG	5 cut(s)	224, 235, 341, 386, 635
BsmAI	GTCTC	5 cut(s)	295, 611, 718, 780, 785
BsmBI	CGTCTC	1 cut(s)	780
BsnI	GGCC	4 cut(s)	228, 299, 628, 810
Bso31I	GGTCTC	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	344, 376, 643, 693
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	5 cut(s)	4, 179, 570, 711, 732
BspANI	GGCC	4 cut(s)	228, 299, 628, 810
BspCNI	CTCAG	1 cut(s)	787
BspLI	GGNNCC	2 cut(s)	49, 131
BspPI	GGATC	2 cut(s)	352, 371
BspTNI	GGTCTC	1 cut(s)	718
BsrDI	GCAATG	2 cut(s)	174, 413
BsrI	ACTGG	2 cut(s)	114, 625
BssECI	CCNNGG	2 cut(s)	234, 294
BssMI	GATC	4 cut(s)	344, 376, 643, 693
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	729, 783
BstDEI	CTNAG	2 cut(s)	41, 795
BstDSI	CCRYGG	2 cut(s)	234, 294
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	4 cut(s)	347, 379, 646, 696
BstMAI	GTCTC	5 cut(s)	295, 611, 718, 780, 785
BstMBI	GATC	4 cut(s)	344, 376, 643, 693
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 272
BstNI	CCWGG	2 cut(s)	729, 783
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	2 cut(s)	727, 781
BstZI	CGGCCG	1 cut(s)	297
BsuRI	GGCC	4 cut(s)	228, 299, 628, 810
BtgI	CCRYGG	2 cut(s)	234, 294
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	14, 130, 227, 627
Csp6I	GTAC	3 cut(s)	172, 430, 714
CviAII	CATG	5 cut(s)	23, 64, 235, 701, 760
CviQI	GTAC	3 cut(s)	172, 430, 714
DdeI	CTNAG	2 cut(s)	41, 795
DpnI	GATC	4 cut(s)	346, 378, 645, 695
DpnII	GATC	4 cut(s)	344, 376, 643, 693
EaeI	YGGCCR	1 cut(s)	297
EagI	CGGCCG	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	718
Eco47I	GGWCC	2 cut(s)	14, 130
Eco52I	CGGCCG	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	727, 781
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	780
FaeI	CATG	5 cut(s)	26, 67, 238, 704, 763
FatI	CATG	5 cut(s)	22, 63, 234, 700, 759
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	804
HaeIII	GGCC	4 cut(s)	228, 299, 628, 810
HapII	CCGG	1 cut(s)	833
Hin1II	CATG	5 cut(s)	26, 67, 238, 704, 763
HinfI	GANTC	2 cut(s)	323, 772
HpaII	CCGG	1 cut(s)	833
HphI	GGTGA	1 cut(s)	653
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	5 cut(s)	32, 92, 374, 512, 554
HpyAV	CCTTC	3 cut(s)	98, 482, 574
HpyCH4V	TGCA	4 cut(s)	254, 275, 548, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 272
HpyF3I	CTNAG	2 cut(s)	41, 795
Hsp92II	CATG	5 cut(s)	26, 67, 238, 704, 763
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	4 cut(s)	344, 376, 643, 693
LmnI	GCTCC	1 cut(s)	53
LweI	GCATC	4 cut(s)	16, 187, 535, 547
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	145, 652
MalI	GATC	4 cut(s)	346, 378, 645, 695
MboI	GATC	4 cut(s)	344, 376, 643, 693
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	75, 163
MnlI	CCTC	5 cut(s)	38, 255, 342, 640, 821
MroXI	GAANNNNTTC	3 cut(s)	87, 243, 803
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	833
MspR9I	CCNGG	2 cut(s)	729, 783
MvaI	CCWGG	2 cut(s)	729, 783
MwoI	GCNNNNNNNGC	2 cut(s)	35, 272
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	4 cut(s)	344, 376, 643, 693
NlaIII	CATG	5 cut(s)	26, 67, 238, 704, 763
NlaIV	GGNNCC	2 cut(s)	49, 131
NmuCI	GTSAC	2 cut(s)	145, 652
NspI	RCATGY	1 cut(s)	704
PdmI	GAANNNNTTC	3 cut(s)	87, 243, 803
PfeI	GAWTC	2 cut(s)	323, 772
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	727, 781
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	2 cut(s)	727, 781
PspN4I	GGNNCC	2 cut(s)	49, 131
PspPI	GGNCC	4 cut(s)	14, 130, 227, 627
RsaI	GTAC	3 cut(s)	173, 431, 715
RsaNI	GTAC	3 cut(s)	172, 430, 714
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	344, 376, 643, 693
Sau96I	GGNCC	4 cut(s)	14, 130, 227, 627
ScrFI	CCNGG	2 cut(s)	729, 783
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	40, 63, 152, 474, 730, 749, 784
SfaNI	GCATC	4 cut(s)	16, 187, 535, 547
SinI	GGWCC	2 cut(s)	14, 130
SsiI	CCGC	5 cut(s)	4, 179, 570, 711, 732
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	727, 781
StyI	CCWWGG	1 cut(s)	234
TaqI	TCGA	5 cut(s)	33, 75, 260, 475, 737
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	323, 772
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	145, 652
Tsp45I	GTSAC	2 cut(s)	145, 652
TspDTI	ATGAA	3 cut(s)	204, 293, 436
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	14, 130
XapI	RAATTY	3 cut(s)	243, 675, 802
XceI	RCATGY	1 cut(s)	704
XmnI	GAANNNNTTC	3 cut(s)	87, 243, 803
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.