Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

30545975 .. 30546319

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCAGCTATATGGTCCTAACCATGAAGCTTTCGAAGCTCTTAGAGGCTCCAACATCGAGCTCATGCTTGGGGTCGAACACGAACGCCTTCAGGACATATCTTCTAACCAAGCCAGCGCTGATGATTGGGTCCAAAACAATGTGGTAACCTATGGAGATGTCAATTTCAAATACATTGCAGTTGGGAATGAAATAGAATCAGGTCCATTTGCACAATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATGCAATTTCTAAGGCCGGTCTTGCAAACAAAATTAAAGTCTCGACAGCGGTTCATCCTATAGTCCTCCAAGAATCCTCCCCTCCATCAAAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

114

Amino Acids

12.35

Weight (kDa)

5.02

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 114	1.1e-28	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	74
AfeI	AGCGCT	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	232, 338
AgsI	TTSAA	2 cut(s)	169, 245
AluBI	AGCT	4 cut(s)	7, 29, 38, 61
AluI	AGCT	4 cut(s)	7, 29, 38, 61
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	118
AoxI	GGCC	2 cut(s)	223, 261
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	240
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
Asp700I	GAANNNNTTC	2 cut(s)	87, 240
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	4 cut(s)	14, 130, 203, 224
AsuII	TTCGAA	1 cut(s)	33
AvaII	GGWCC	3 cut(s)	14, 130, 203
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	292
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	3 cut(s)	14, 130, 203
BmgT120I	GGNCC	4 cut(s)	14, 130, 203, 224
BmiI	GGNNCC	2 cut(s)	49, 131
Bpu14I	TTCGAA	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 338
Bse118I	RCCGGY	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	232, 338
BseMI	GCAATG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	225, 263
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	232, 338
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	225, 263
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	2 cut(s)	225, 263
BspLI	GGNNCC	2 cut(s)	49, 131
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	41, 258
BstDSI	CCRYGG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 269
BstPI	GGTNACC	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	225, 263
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	4 cut(s)	14, 130, 203, 224
CviAII	CATG	3 cut(s)	23, 64, 232
CviJI	RGCY	8 cut(s)	7, 29, 38, 48, 61, 113, 225, 263
CviKI_1	RGCY	8 cut(s)	7, 29, 38, 48, 61, 113, 225, 263
DdeI	CTNAG	2 cut(s)	41, 258
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	3 cut(s)	14, 130, 203
Eco47III	AGCGCT	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	26, 67, 235
FaiI	YATR	8 cut(s)	10, 12, 24, 65, 98, 153, 233, 308
FatI	CATG	3 cut(s)	22, 63, 231
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	225, 263
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	26, 67, 235
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	2 cut(s)	197, 320
HpaII	CCGG	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	92, 289
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	5 cut(s)	4, 179, 212, 251, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 269
HpyF3I	CTNAG	2 cut(s)	41, 258
Hsp92II	CATG	3 cut(s)	26, 67, 235
HspAI	GCGC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	5 cut(s)	77, 127, 186, 240, 277
Lsp1109I	GCAGC	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	5 cut(s)	163, 215, 240, 252, 279
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	38, 323, 334, 339
MroXI	GAANNNNTTC	2 cut(s)	87, 240
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	35, 269
NcoI	CCATGG	1 cut(s)	231
NlaIII	CATG	3 cut(s)	26, 67, 235
NlaIV	GGNNCC	2 cut(s)	49, 131
NspV	TTCGAA	1 cut(s)	33
PdmI	GAANNNNTTC	2 cut(s)	87, 240
PfeI	GAWTC	2 cut(s)	197, 320
PkrI	GCNGC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	49, 131
PspPI	GGNCC	4 cut(s)	14, 130, 203, 224
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	4 cut(s)	14, 130, 203, 224
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	6 cut(s)	9, 31, 40, 63, 152, 205
SfcI	CTRYAG	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	3 cut(s)	14, 130, 203
Sse9I	AATT	5 cut(s)	163, 215, 240, 252, 279
SsiI	CCGC	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	4 cut(s)	33, 57, 75, 290
TasI	AATT	5 cut(s)	163, 215, 240, 252, 279
TfiI	GAWTC	2 cut(s)	197, 320
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	39, 204, 290
VpaK11BI	GGWCC	3 cut(s)	14, 130, 203
XapI	RAATTY	1 cut(s)	240
XmnI	GAANNNNTTC	2 cut(s)	87, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.