Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003477.1

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

65108 .. 65959

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003477.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgcggctatatggtcctaactatgacgctctcgaagctcttagaggctccaacatcgagctcatgcttggggtcgaacatgaacgccttcaggacatatcttctaaccaagccagtgctgatgattgggtccaaaacaatgtggtaacctatggagatgtcaatttcaaatacattgcagttgggaatgaaatagaatcaggtccatttgcacaatttgttggccctgccatggaaaaaattcaaaatgcaatttctaaggctggtcttgcgaacaaaattaaagtctccacagcggttcatcctatagtcctccaagaatccttccctccatcaaaaggatcattcaagcaggattatcgagcctttcttgatcctgtcattggtttccttgtgggaaaccaatctccgttgcttgttaatatgtacccatactttagttacattgacaaccgagagattaaccttcaatatgctcttttcacatctccatcagttcaggttcaagatggacaacttggctaccaaaacttgtttgttgcaattctggatgcacattactccgctttagagaaggccggaggcagttctttgaaaattgttgtatcggaaatgggttggccttccgctggtggtgatggcgaagtgacaacaatagaaaatgcgagaatctacaactcacatgtgattaatcatgtcaacggtggtactccaaagaaacctgaaggtcctatagaaacttacatatttgccatgttcaatgagaatgagaaaactggagcagagactgagaagaatttcgggctctttttaccaaccggagatcctgcttatcctatcaatttcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

283

Amino Acids

31.08

Weight (kDa)

4.83

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	4, 296, 564, 627
AclWI	GGATC	3 cut(s)	349, 368, 818
AcsI	RAATTY	2 cut(s)	240, 796
AcuI	CTGAAG	2 cut(s)	74, 744
AfaI	GTAC	2 cut(s)	428, 709
AfiI	CCNNNNNNNGG	4 cut(s)	232, 338, 383, 629
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	8 cut(s)	169, 245, 349, 470, 506, 595, 760, 847
AluBI	AGCT	2 cut(s)	38, 61
AluI	AGCT	2 cut(s)	38, 61
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	292, 779
AlwI	GGATC	3 cut(s)	349, 368, 818
AlwNI	CAGNNNCTG	1 cut(s)	788
AoxI	GGCC	3 cut(s)	223, 576, 620
ApoI	RAATTY	2 cut(s)	240, 796
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AseI	ATTAAT	1 cut(s)	690
Asp700I	GAANNNNTTC	3 cut(s)	87, 240, 797
AspS9I	GGNCC	5 cut(s)	14, 130, 203, 224, 728
AsuHPI	GGTGA	1 cut(s)	647
AvaII	GGWCC	4 cut(s)	14, 130, 203, 728
BanII	GRGCYC	2 cut(s)	63, 807
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	4 cut(s)	340, 499, 503, 632
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BcoDI	GTCTC	2 cut(s)	292, 779
BfmI	CTRYAG	2 cut(s)	306, 732
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	4 cut(s)	14, 130, 203, 728
BmgT120I	GGNCC	5 cut(s)	14, 130, 203, 224, 728
BmiI	GGNNCC	2 cut(s)	49, 131
BmsI	GCATC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	818
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 338, 383, 629
Bse1I	ACTGG	2 cut(s)	114, 781
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	301, 556
BseLI	CCNNNNNNNGG	4 cut(s)	232, 338, 383, 629
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	2 cut(s)	114, 781
BshFI	GGCC	3 cut(s)	225, 578, 622
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	579, 819
BslI	CCNNNNNNNGG	4 cut(s)	232, 338, 383, 629
BsmAI	GTCTC	2 cut(s)	292, 779
BsnI	GGCC	3 cut(s)	225, 578, 622
Bsp1286I	GDGCHC	2 cut(s)	63, 807
Bsp143I	GATC	3 cut(s)	341, 373, 823
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	4 cut(s)	4, 296, 564, 627
BspANI	GGCC	3 cut(s)	225, 578, 622
BspCNI	CTCAG	1 cut(s)	781
BspLI	GGNNCC	2 cut(s)	49, 131
BspPI	GGATC	3 cut(s)	349, 368, 818
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	114, 781
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	341, 373, 823
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	704
BstDEI	CTNAG	3 cut(s)	41, 258, 789
BstDSI	CCRYGG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	301, 556
BstKTI	GATC	3 cut(s)	344, 376, 826
BstMAI	GTCTC	2 cut(s)	292, 779
BstMBI	GATC	3 cut(s)	341, 373, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 269
BstNSI	RCATGY	1 cut(s)	686
BstPI	GGTNACC	1 cut(s)	145
BstSFI	CTRYAG	2 cut(s)	306, 732
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	3 cut(s)	225, 578, 622
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	301, 556
BtsIMutI	CAGTG	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	788
Cfr13I	GGNCC	5 cut(s)	14, 130, 203, 224, 728
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	427, 708
CviAII	CATG	6 cut(s)	64, 80, 232, 683, 695, 754
CviQI	GTAC	2 cut(s)	427, 708
DdeI	CTNAG	3 cut(s)	41, 258, 789
DpnI	GATC	3 cut(s)	343, 375, 825
DpnII	GATC	3 cut(s)	341, 373, 823
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	63, 807
Eco47I	GGWCC	4 cut(s)	14, 130, 203, 728
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	74, 744
Eco91I	GGTNACC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	728
EcoO65I	GGTNACC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	63, 807
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	6 cut(s)	67, 83, 235, 686, 698, 757
FatI	CATG	6 cut(s)	63, 79, 231, 682, 694, 753
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	288, 563
FriOI	GRGCYC	2 cut(s)	63, 807
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	3 cut(s)	225, 578, 622
HapII	CCGG	2 cut(s)	579, 819
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	6 cut(s)	67, 83, 235, 686, 698, 757
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	3 cut(s)	197, 320, 669
HpaII	CCGG	2 cut(s)	579, 819
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	1 cut(s)	610
Hpy188III	TCNNGA	5 cut(s)	32, 92, 371, 506, 548
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	6 cut(s)	98, 334, 476, 568, 633, 719
HpyCH4III	ACNGT	1 cut(s)	704
HpyCH4V	TGCA	5 cut(s)	179, 212, 251, 542, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 269
HpyF3I	CTNAG	3 cut(s)	41, 258, 789
Hsp92II	CATG	6 cut(s)	67, 83, 235, 686, 698, 757
Kzo9I	GATC	3 cut(s)	341, 373, 823
LmnI	GCTCC	2 cut(s)	53, 779
LweI	GCATC	1 cut(s)	541
MaeIII	GTNAC	3 cut(s)	145, 440, 646
MalI	GATC	3 cut(s)	343, 375, 825
MboI	GATC	3 cut(s)	341, 373, 823
MboII	GAAGA	2 cut(s)	93, 805
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	2 cut(s)	63, 807
MluCI	AATT	9 cut(s)	163, 215, 240, 252, 279, 543, 597, 796, 841
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	38, 323, 339, 575
MroXI	GAANNNNTTC	3 cut(s)	87, 240, 797
MseI	TTAA	4 cut(s)	282, 420, 462, 690
MspA1I	CMGCKG	2 cut(s)	296, 629
MspI	CCGG	2 cut(s)	579, 819
MwoI	GCNNNNNNNGC	2 cut(s)	35, 269
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	341, 373, 823
NlaIII	CATG	6 cut(s)	67, 83, 235, 686, 698, 757
NlaIV	GGNNCC	2 cut(s)	49, 131
NmuCI	GTSAC	1 cut(s)	646
NspI	RCATGY	1 cut(s)	686
PciI	ACATGT	1 cut(s)	682
PdmI	GAANNNNTTC	3 cut(s)	87, 240, 797
PfeI	GAWTC	3 cut(s)	197, 320, 669
PkrI	GCNGC	1 cut(s)	6
PpuMI	RGGWCCY	1 cut(s)	728
PscI	ACATGT	1 cut(s)	682
PshBI	ATTAAT	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	728
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	49, 131
PspPI	GGNCC	5 cut(s)	14, 130, 203, 224, 728
PspPPI	RGGWCCY	1 cut(s)	728
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	2 cut(s)	428, 709
RsaNI	GTAC	2 cut(s)	427, 708
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	282, 420, 462, 690
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	341, 373, 823
Sau96I	GGNCC	5 cut(s)	14, 130, 203, 224, 728
SduI	GDGCHC	2 cut(s)	63, 807
SetI	ASST	8 cut(s)	40, 63, 152, 205, 468, 504, 724, 730
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	2 cut(s)	306, 732
SinI	GGWCC	4 cut(s)	14, 130, 203, 728
Sse9I	AATT	9 cut(s)	163, 215, 240, 252, 279, 543, 597, 796, 841
SsiI	CCGC	4 cut(s)	4, 296, 564, 627
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	704
TaqI	TCGA	4 cut(s)	33, 57, 75, 361
TasI	AATT	9 cut(s)	163, 215, 240, 252, 279, 543, 597, 796, 841
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	197, 320, 669
Tru1I	TTAA	4 cut(s)	282, 420, 462, 690
Tru9I	TTAA	4 cut(s)	282, 420, 462, 690
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	646
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	3 cut(s)	96, 204, 290
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	4 cut(s)	14, 130, 203, 728
VspI	ATTAAT	1 cut(s)	690
XapI	RAATTY	2 cut(s)	240, 796
XceI	RCATGY	1 cut(s)	686
XmnI	GAANNNNTTC	3 cut(s)	87, 240, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.