Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

18694395 .. 18695955

Gene Structure 1561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGATGGCAAAGTCCCATGTATCTTCCCAAGTCCCTTCCACAGTTTACAAGTTGTTGCTACTCTTTGGAATCGTAATGGCTACCTTTACCACAACAGGTGCCCAAATTGGTGTTTGTTATGGGACTGTTGCGAACAACTTGCCACCCCCACAAGAAGTTATATCACTTTACAACCAACATAACATCAAAAGGATGCGGCTATATGGTCCTAACCGTGATGCTCTCGAAGCTCTTAGAGGCTCCAACATCGAGCTCATGCTTGGCGTCGAACACGAAAGCCTTCAGGATATTTCTTCTAACCAGGCCAGTGCTGATGACTGGGTCCAGAACAATGTGGTAAATTATGGAGATGTCAATTTCAAATACATTGCTGTAGGAAATGAAATAGAATCAGGTTCATTAGCACCATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATGCAATTTCCCAGGCTGGTCTTGCAAACAAAATTAAAGTCTCCACTGCTGTTCATCCTATAATCCTTCAAGACTCCTTCCCTCCATCAAAAGGATCGTTCAAGCAAGAGTATCGAGACTTTCTTGATCCCATCATTGGTTTTCTTGTGGGAAATCAATCTCCCTTGCTTGTTAATATGTACTCGTACTTTAGTTACATTGACGACCGGGGTATCAACATTCAGTATGCTCTTTTCACCTATCCATCAGTTCTGGTTTCAGATGGACAACTTGGGTACCAAAACCTGTTTGATGCACTTCTCGACGCACATTACTCGGCTTTAGAGAAGGCCGGAGGTAGCTCGTTGAAAATTGTTGTATCAGAGACTGGTTGGCCCTCCGCTGGTGGTGATGACCAAGTTACAACAATAGAGAATGCGAGAATCTACCACTCAAATCTGATCAAACATGTCAAGAGTGGTACTCCGAAGAAACCTGAAGGTCCGACAGAAACTTACATATTCGCCATGTTCAATGAGAATGAGAAAAGTGGAGTAGAGACTGAGAAGAATTTCGGACTCTTTTTACCAACCAAAGATCCTGTTTATCCTATTGATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

348

Amino Acids

38.14

Weight (kDa)

5.18

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	36 - 346	1.9e-105	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	714
AccB1I	GGYRCC	2 cut(s)	98, 714
AccB7I	CCANNNNNTGG	1 cut(s)	413
AciI	CCGC	2 cut(s)	196, 819
AclWI	GGATC	3 cut(s)	541, 560, 1010
AcsI	RAATTY	2 cut(s)	432, 988
AcuI	CTGAAG	2 cut(s)	266, 936
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	4 cut(s)	620, 626, 716, 901
AfiI	CCNNNNNNNGG	5 cut(s)	413, 424, 530, 575, 821
AflIII	ACRYGT	1 cut(s)	886
AgsI	TTSAA	7 cut(s)	361, 437, 509, 541, 787, 952, 1039
AjnI	CCWGG	2 cut(s)	300, 450
AluBI	AGCT	3 cut(s)	230, 253, 780
AluI	AGCT	3 cut(s)	230, 253, 780
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	4 cut(s)	484, 549, 797, 971
AlwI	GGATC	3 cut(s)	541, 560, 1010
AlwNI	CAGNNNCTG	1 cut(s)	806
AoxI	GGCC	4 cut(s)	303, 415, 768, 812
ApoI	RAATTY	2 cut(s)	432, 988
ArsI	GACNNNNNNTTYG	2 cut(s)	462, 494
Asp700I	GAANNNNTTC	3 cut(s)	279, 432, 989
Asp718I	GGTACC	1 cut(s)	714
AspS9I	GGNCC	5 cut(s)	206, 322, 416, 813, 920
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	667, 839
AvaII	GGWCC	3 cut(s)	206, 322, 920
BaeGI	GKGCMC	1 cut(s)	103
BaeI	ACNNNNGTAYC	4 cut(s)	634, 667, 698, 731
BanI	GGYRCC	2 cut(s)	98, 714
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	4 cut(s)	532, 578, 691, 695
BcgI	CGANNNNNNTGC	6 cut(s)	121, 155, 533, 567, 735, 769
BciT130I	CCWGG	2 cut(s)	302, 452
BclI	TGATCA	1 cut(s)	879
BcnI	CCSGG	1 cut(s)	647
BcoDI	GTCTC	4 cut(s)	484, 549, 797, 971
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	3 cut(s)	302, 452, 647
Bme18I	GGWCC	3 cut(s)	206, 322, 920
BmgT120I	GGNCC	5 cut(s)	206, 322, 416, 813, 920
BmiI	GGNNCC	4 cut(s)	100, 241, 323, 716
BmrFI	CCNGG	3 cut(s)	302, 452, 647
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	183, 208, 721
BmuI	ACTGGG	1 cut(s)	328
BplI	GAGNNNNNCTC	2 cut(s)	886, 918
BpuMI	CCSGG	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	423, 450, 646
Bsc4I	CCNNNNNNNGG	5 cut(s)	413, 424, 530, 575, 821
Bse1I	ACTGG	3 cut(s)	306, 323, 811
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	302, 452
BseDI	CCNNGG	3 cut(s)	423, 450, 646
BseGI	GGATG	2 cut(s)	198, 493
BseLI	CCNNNNNNNGG	5 cut(s)	413, 424, 530, 575, 821
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	972
BseNI	ACTGG	3 cut(s)	306, 323, 811
BseSI	GKGCMC	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	646
BshFI	GGCC	4 cut(s)	305, 417, 770, 814
BshNI	GGYRCC	2 cut(s)	98, 714
BsiEI	CGRYCG	1 cut(s)	646
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	646, 771
BslFI	GGGAC	2 cut(s)	17, 136
BslI	CCNNNNNNNGG	5 cut(s)	413, 424, 530, 575, 821
BsmAI	GTCTC	4 cut(s)	484, 549, 797, 971
BsmFI	GGGAC	2 cut(s)	17, 136
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	4 cut(s)	305, 417, 770, 814
Bsp1286I	GDGCHC	2 cut(s)	103, 255
Bsp143I	GATC	4 cut(s)	533, 565, 879, 1015
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	2 cut(s)	196, 819
BspANI	GGCC	4 cut(s)	305, 417, 770, 814
BspCNI	CTCAG	1 cut(s)	973
BspLI	GGNNCC	4 cut(s)	100, 241, 323, 716
BspPI	GGATC	3 cut(s)	541, 560, 1010
BspT107I	GGYRCC	2 cut(s)	98, 714
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	3 cut(s)	306, 323, 811
BssECI	CCNNGG	3 cut(s)	423, 450, 646
BssMI	GATC	4 cut(s)	533, 565, 879, 1015
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	302, 452
Bst4CI	ACNGT	3 cut(s)	43, 127, 215
BstACI	GRCGYC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	233, 981
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	198, 493
BstKTI	GATC	4 cut(s)	536, 568, 882, 1018
BstMAI	GTCTC	4 cut(s)	484, 549, 797, 971
BstMBI	GATC	4 cut(s)	533, 565, 879, 1015
BstMCI	CGRYCG	1 cut(s)	646
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 461
BstNI	CCWGG	2 cut(s)	302, 452
BstNSI	RCATGY	1 cut(s)	890
BstSCI	CCNGG	3 cut(s)	300, 450, 645
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1015
BsuRI	GGCC	4 cut(s)	305, 417, 770, 814
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	198, 493
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	313, 483
CaiI	CAGNNNCTG	1 cut(s)	806
Cfr13I	GGNCC	5 cut(s)	206, 322, 416, 813, 920
CseI	GACGC	2 cut(s)	253, 752
Csp6I	GTAC	4 cut(s)	619, 625, 715, 900
CviAII	CATG	5 cut(s)	17, 256, 424, 887, 946
CviQI	GTAC	4 cut(s)	619, 625, 715, 900
DdeI	CTNAG	2 cut(s)	233, 981
DpnI	GATC	4 cut(s)	535, 567, 881, 1017
DpnII	GATC	4 cut(s)	533, 565, 879, 1015
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	3 cut(s)	206, 322, 920
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	266, 936
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	300, 450
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	5 cut(s)	20, 259, 427, 890, 949
FaqI	GGGAC	2 cut(s)	17, 136
FatI	CATG	5 cut(s)	16, 255, 423, 886, 945
FbaI	TGATCA	1 cut(s)	879
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	2 cut(s)	205, 480
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
HaeIII	GGCC	4 cut(s)	305, 417, 770, 814
HapII	CCGG	2 cut(s)	646, 771
HgaI	GACGC	2 cut(s)	253, 752
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	20, 259, 427, 890, 949
HinfI	GANTC	5 cut(s)	69, 389, 512, 861, 996
HpaII	CCGG	2 cut(s)	646, 771
HphI	GGTGA	2 cut(s)	667, 839
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	6 cut(s)	700, 802, 879, 906, 924, 995
Hpy188III	TCNNGA	8 cut(s)	224, 284, 325, 509, 554, 563, 740, 892
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	269, 746
HpyAV	CCTTC	6 cut(s)	45, 290, 515, 526, 760, 911
HpyCH4III	ACNGT	3 cut(s)	43, 127, 215
HpyCH4V	TGCA	3 cut(s)	443, 464, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 461
HpyF3I	CTNAG	2 cut(s)	233, 981
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	20, 259, 427, 890, 949
KpnI	GGTACC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	879
Kzo9I	GATC	4 cut(s)	533, 565, 879, 1015
LmnI	GCTCC	1 cut(s)	245
LweI	GCATC	3 cut(s)	183, 208, 721
MaeIII	GTNAC	2 cut(s)	632, 838
MalI	GATC	4 cut(s)	535, 567, 881, 1017
MboI	GATC	4 cut(s)	533, 565, 879, 1015
MboII	GAAGA	4 cut(s)	15, 285, 919, 997
MflI	RGATCY	1 cut(s)	1015
MhlI	GDGCHC	2 cut(s)	103, 255
MluCI	AATT	8 cut(s)	105, 340, 355, 432, 444, 471, 789, 988
MlyI	GAGTC	2 cut(s)	506, 990
MmeI	TCCRAC	2 cut(s)	267, 947
MnlI	CCTC	4 cut(s)	230, 531, 767, 826
MroXI	GAANNNNTTC	3 cut(s)	279, 432, 989
MseI	TTAA	2 cut(s)	474, 612
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	2 cut(s)	646, 771
MspR9I	CCNGG	3 cut(s)	302, 452, 647
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	2 cut(s)	302, 452
MwoI	GCNNNNNNNGC	2 cut(s)	227, 461
NciI	CCSGG	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	4 cut(s)	533, 565, 879, 1015
NlaIII	CATG	5 cut(s)	20, 259, 427, 890, 949
NlaIV	GGNNCC	4 cut(s)	100, 241, 323, 716
NmeAIII	GCCGAG	1 cut(s)	734
NspI	RCATGY	1 cut(s)	890
PciI	ACATGT	1 cut(s)	886
PctI	GAATGC	1 cut(s)	859
PdmI	GAANNNNTTC	3 cut(s)	279, 432, 989
PfeI	GAWTC	3 cut(s)	69, 389, 861
PflFI	GACNNNGTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	2 cut(s)	506, 990
PpsI	GAGTC	2 cut(s)	506, 990
PscI	ACATGT	1 cut(s)	886
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	300, 450
PspGI	CCWGG	2 cut(s)	300, 450
PspN4I	GGNNCC	4 cut(s)	100, 241, 323, 716
PspPI	GGNCC	5 cut(s)	206, 322, 416, 813, 920
PstNI	CAGNNNCTG	1 cut(s)	806
PsuI	RGATCY	1 cut(s)	1015
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	4 cut(s)	620, 626, 716, 901
RsaNI	GTAC	4 cut(s)	619, 625, 715, 900
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	474, 612
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	4 cut(s)	533, 565, 879, 1015
Sau96I	GGNCC	5 cut(s)	206, 322, 416, 813, 920
SchI	GAGTC	2 cut(s)	506, 990
ScrFI	CCNGG	3 cut(s)	302, 452, 647
SduI	GDGCHC	2 cut(s)	103, 255
SfaNI	GCATC	3 cut(s)	183, 208, 721
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	3 cut(s)	206, 322, 920
Sse9I	AATT	8 cut(s)	105, 340, 355, 432, 444, 471, 789, 988
SsiI	CCGC	2 cut(s)	196, 819
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	300, 450, 645
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	43, 127, 215
TaqI	TCGA	5 cut(s)	225, 249, 267, 553, 741
TasI	AATT	8 cut(s)	105, 340, 355, 432, 444, 471, 789, 988
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	3 cut(s)	69, 389, 861
Tru1I	TTAA	2 cut(s)	474, 612
Tru9I	TTAA	2 cut(s)	474, 612
TscAI	CASTG	2 cut(s)	313, 490
TspDTI	ATGAA	3 cut(s)	387, 396, 482
TspRI	CASTG	2 cut(s)	313, 490
Tth111I	GACNNNGTC	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	3 cut(s)	206, 322, 920
XapI	RAATTY	2 cut(s)	432, 988
XceI	RCATGY	1 cut(s)	890
XmnI	GAANNNNTTC	3 cut(s)	279, 432, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.