Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

29208450 .. 29211314

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGCAACATCTGACAGTGAGATATGGTGTGACCAAGGCGACCACATCTAAAACACCAATCAGAGAGACGTTCATACTGAATCTCGGCCCAGACACACACACAAGCGTTTGTTATGGAACTGTAGCAAACAATCTACCAGAACCACGACAAGTAATATCACTTTACAACCAACATAACATCAAAAGGATGCGGCTATATGGTCCCAACCATGACGCTCTCGAAGCTCTTAGAGGCTCCAACATCGAGCTCATGCTTGGGGTCGAACATGAATGCCTTCAGGACATATCTTCTAACCAAGCCAGTGCTGATGATTGGGTCCAAAACAATGTGGTAACCTATGGAGATGTCAATTTCAAATACATTGCAGTTGGGAATGAAATAGAATCAGGTCCATTTGCACAATTTGTTGGCCCTGACATGGAAAAAATTCAAAATGCAATTTCTAAGGCTGGTCTTGCGAACAAAATTAAAGTCTCCACAGCGGTTCATCCTATAGTCCTCCAAGAATCCTCCCCTCTATCAAAAGGATCATTCAAGCAGGATTACCGAGCCTTTCTTGATCCTGTCATTGGTTTTCTTGTGGGAAACCAATCTCCGCTGCTTGTTAATATGTACCCATACTTTAATGGACAACTTGACTACCAAAACTTGTTTGATGCAATTCTGGATGCACATTACTCCGCTTTAGAGAAGGCCGGAGGCAGTTCTTTGAAAATTGTTGTATCAGAAATGGGTTGGCCTTTCGCTGGTGGTGATGGCGAAGGTGGTACTCCAAAGAAACCTGAAGGTCCTATAGAAACTTACATATTTGCCATGTTCAATGAGAATGAGAAAACTGGAGCAGAGACTGAGAAGAATTTCGGGCTCTTTTTACCAACCGGAGATCCAGTTTATCCTATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

304

Amino Acids

33.4

Weight (kDa)

5.18

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	36 - 303	1e-74	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	193, 485, 599, 684
AclWI	GGATC	3 cut(s)	538, 557, 881
AcsI	RAATTY	2 cut(s)	429, 859
AcuI	CTGAAG	2 cut(s)	263, 807
AfaI	GTAC	2 cut(s)	617, 772
AfiI	CCNNNNNNNGG	3 cut(s)	421, 572, 749
AgsI	TTSAA	6 cut(s)	358, 434, 538, 715, 823, 910
AluBI	AGCT	2 cut(s)	227, 250
AluI	AGCT	2 cut(s)	227, 250
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	3 cut(s)	62, 481, 842
AlwI	GGATC	3 cut(s)	538, 557, 881
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	4 cut(s)	88, 412, 696, 740
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	2 cut(s)	429, 859
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
Asp700I	GAANNNNTTC	3 cut(s)	276, 429, 860
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	6 cut(s)	89, 203, 319, 392, 413, 791
AsuHPI	GGTGA	1 cut(s)	767
AvaII	GGWCC	4 cut(s)	203, 319, 392, 791
BanII	GRGCYC	2 cut(s)	252, 870
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	62, 481, 842
BfmI	CTRYAG	3 cut(s)	123, 495, 795
BisI	GCNGC	2 cut(s)	194, 602
BlsI	GCNGC	2 cut(s)	195, 603
Bme18I	GGWCC	4 cut(s)	203, 319, 392, 791
BmgT120I	GGNCC	6 cut(s)	89, 203, 319, 392, 413, 791
BmiI	GGNNCC	3 cut(s)	205, 238, 320
BmsI	GCATC	3 cut(s)	180, 649, 661
BpmI	CTGGAG	1 cut(s)	861
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	881
BsaXI	ACNNNNNCTCC	2 cut(s)	876, 906
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 572, 749
Bse1I	ACTGG	3 cut(s)	303, 844, 890
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	195, 490, 676
BseLI	CCNNNNNNNGG	3 cut(s)	421, 572, 749
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	843
BseNI	ACTGG	3 cut(s)	303, 844, 890
BseXI	GCAGC	1 cut(s)	588
BshFI	GGCC	4 cut(s)	90, 414, 698, 742
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	699, 882
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	421, 572, 749
BsmAI	GTCTC	3 cut(s)	62, 481, 842
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	4 cut(s)	90, 414, 698, 742
Bsp1286I	GDGCHC	2 cut(s)	252, 870
Bsp143I	GATC	3 cut(s)	530, 562, 886
BspACI	CCGC	4 cut(s)	193, 485, 599, 684
BspANI	GGCC	4 cut(s)	90, 414, 698, 742
BspCNI	CTCAG	1 cut(s)	844
BspLI	GGNNCC	3 cut(s)	205, 238, 320
BspPI	GGATC	3 cut(s)	538, 557, 881
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	3 cut(s)	303, 844, 890
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	530, 562, 886
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	19, 124
BstDEI	CTNAG	3 cut(s)	230, 447, 852
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	3 cut(s)	195, 490, 676
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	533, 565, 889
BstMAI	GTCTC	3 cut(s)	62, 481, 842
BstMBI	GATC	3 cut(s)	530, 562, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 458
BstPI	GGTNACC	1 cut(s)	334
BstSFI	CTRYAG	3 cut(s)	123, 495, 795
BstV1I	GCAGC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BsuRI	GGCC	4 cut(s)	90, 414, 698, 742
BtsCI	GGATG	3 cut(s)	195, 490, 676
BtsIMutI	CAGTG	2 cut(s)	24, 310
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	6 cut(s)	89, 203, 319, 392, 413, 791
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	616, 771
CviAII	CATG	5 cut(s)	212, 253, 269, 421, 817
CviQI	GTAC	2 cut(s)	616, 771
DdeI	CTNAG	3 cut(s)	230, 447, 852
DpnI	GATC	3 cut(s)	532, 564, 888
DpnII	GATC	3 cut(s)	530, 562, 886
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	252, 870
Eco47I	GGWCC	4 cut(s)	203, 319, 392, 791
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	263, 807
Eco91I	GGTNACC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	791
EcoO65I	GGTNACC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	252, 870
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	5 cut(s)	215, 256, 272, 424, 820
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	5 cut(s)	211, 252, 268, 420, 816
Fnu4HI	GCNGC	2 cut(s)	194, 602
FokI	GGATG	3 cut(s)	202, 477, 683
FriOI	GRGCYC	2 cut(s)	252, 870
Fsp4HI	GCNGC	2 cut(s)	194, 602
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	194, 602
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	4 cut(s)	90, 414, 698, 742
HapII	CCGG	2 cut(s)	699, 882
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	5 cut(s)	215, 256, 272, 424, 820
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	82, 386, 509
HpaII	CCGG	2 cut(s)	699, 882
HphI	GGTGA	1 cut(s)	767
Hpy188I	TCNGA	3 cut(s)	15, 65, 730
Hpy188III	TCNNGA	4 cut(s)	221, 281, 560, 668
HpyAV	CCTTC	4 cut(s)	287, 688, 758, 782
HpyCH4III	ACNGT	2 cut(s)	19, 124
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	5 cut(s)	368, 401, 440, 662, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 458
HpyF3I	CTNAG	3 cut(s)	230, 447, 852
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	5 cut(s)	215, 256, 272, 424, 820
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	530, 562, 886
LmnI	GCTCC	2 cut(s)	242, 842
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	3 cut(s)	180, 649, 661
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	31, 334
MalI	GATC	3 cut(s)	532, 564, 888
MboI	GATC	3 cut(s)	530, 562, 886
MboII	GAAGA	2 cut(s)	282, 868
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	2 cut(s)	252, 870
MluCI	AATT	9 cut(s)	352, 404, 429, 441, 468, 663, 717, 859, 904
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	227, 512, 523, 528, 695
MroXI	GAANNNNTTC	3 cut(s)	276, 429, 860
MseI	TTAA	3 cut(s)	471, 609, 627
MspA1I	CMGCKG	2 cut(s)	485, 601
MspI	CCGG	2 cut(s)	699, 882
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	224, 458
NdeII	GATC	3 cut(s)	530, 562, 886
NlaIII	CATG	5 cut(s)	215, 256, 272, 424, 820
NlaIV	GGNNCC	3 cut(s)	205, 238, 320
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	31
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	3 cut(s)	276, 429, 860
PfeI	GAWTC	3 cut(s)	82, 386, 509
PkrI	GCNGC	2 cut(s)	195, 603
PpuMI	RGGWCCY	1 cut(s)	791
Psp124BI	GAGCTC	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	791
PspEI	GGTNACC	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	205, 238, 320
PspPI	GGNCC	6 cut(s)	89, 203, 319, 392, 413, 791
PspPPI	RGGWCCY	1 cut(s)	791
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	886
RsaI	GTAC	2 cut(s)	617, 772
RsaNI	GTAC	2 cut(s)	616, 771
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	471, 609, 627
SatI	GCNGC	2 cut(s)	194, 602
Sau3AI	GATC	3 cut(s)	530, 562, 886
Sau96I	GGNCC	6 cut(s)	89, 203, 319, 392, 413, 791
SduI	GDGCHC	2 cut(s)	252, 870
SetI	ASST	8 cut(s)	74, 229, 252, 341, 394, 769, 787, 793
SfaNI	GCATC	3 cut(s)	180, 649, 661
SfcI	CTRYAG	3 cut(s)	123, 495, 795
SinI	GGWCC	4 cut(s)	203, 319, 392, 791
Sse9I	AATT	9 cut(s)	352, 404, 429, 441, 468, 663, 717, 859, 904
SsiI	CCGC	4 cut(s)	193, 485, 599, 684
SstI	GAGCTC	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	19, 124
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	222, 246, 264
TasI	AATT	9 cut(s)	352, 404, 429, 441, 468, 663, 717, 859, 904
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	82, 386, 509
Tru1I	TTAA	3 cut(s)	471, 609, 627
Tru9I	TTAA	3 cut(s)	471, 609, 627
TscAI	CASTG	2 cut(s)	24, 310
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	4 cut(s)	64, 285, 393, 479
TspRI	CASTG	2 cut(s)	24, 310
VpaK11BI	GGWCC	4 cut(s)	203, 319, 392, 791
XapI	RAATTY	2 cut(s)	429, 859
XmnI	GAANNNNTTC	3 cut(s)	276, 429, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.