Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

890035 .. 890549

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG013600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAAAAGATTCACAATGCAATCTCAAAGGCTGATCTTGCAAACAAAATTAAAGTCTCCACTGCCGTTCAACCTATGGCCAGCATGGCTATCAAAACTTGTTTGATGCAATTCTTGATGCACATGCATTACTCTGCTTTAGAGAAGGCCGGGGACAGTTCTTTGACAATTGTTGTATCAGAGACTGGTTGGCCCTCCGCTGGTGGTGATGGCCAAGTGACAACAAAGGAGAATGCGAGAATTTACAACTCAAATGTGGTCAAGCATGTCAAGCGTGGTACTCCGAAGAAGCCTGAGTTCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

101

Amino Acids

11.0

Weight (kDa)

9.52

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	35 - 99	1.4e-15	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	78, 211
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	71
Alw26I	GTCTC	2 cut(s)	61, 176
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	4 cut(s)	78, 147, 191, 211
ApoI	RAATTY	1 cut(s)	240
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	218
BalI	TGGCCA	2 cut(s)	80, 213
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	61, 176
BglI	GCCNNNNNGGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	96, 108
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	190
BshFI	GGCC	4 cut(s)	80, 149, 193, 213
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	61, 176
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	4 cut(s)	80, 149, 193, 213
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	4 cut(s)	80, 149, 193, 213
BspCNI	CTCAG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	61, 176
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 86, 271
BstNSI	RCATGY	2 cut(s)	127, 269
BstSCI	CCNGG	1 cut(s)	149
BsuRI	GGCC	4 cut(s)	80, 149, 193, 213
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	3 cut(s)	85, 124, 266
CviJI	RGCY	7 cut(s)	32, 80, 89, 149, 193, 213, 292
CviKI_1	RGCY	7 cut(s)	32, 80, 89, 149, 193, 213, 292
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	2 cut(s)	78, 211
EcoT22I	ATGCAT	1 cut(s)	129
FaeI	CATG	3 cut(s)	88, 127, 269
FaiI	YATR	5 cut(s)	77, 86, 125, 267, 304
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	84, 123, 265
HaeIII	GGCC	4 cut(s)	80, 149, 193, 213
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	3 cut(s)	88, 127, 269
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	181, 285
Hpy188III	TCNNGA	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	5 cut(s)	20, 41, 109, 121, 127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 86, 271
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	88, 127, 269
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	4 cut(s)	94, 163, 171, 186
LweI	GCATC	2 cut(s)	96, 108
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	298
MfeI	CAATTG	1 cut(s)	168
MlsI	TGGCCA	2 cut(s)	80, 213
MluCI	AATT	4 cut(s)	48, 110, 168, 240
MluNI	TGGCCA	2 cut(s)	80, 213
MnlI	CCTC	1 cut(s)	205
Mox20I	TGGCCA	2 cut(s)	80, 213
Mph1103I	ATGCAT	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	2 cut(s)	80, 213
MseI	TTAA	1 cut(s)	51
Msp20I	TGGCCA	2 cut(s)	80, 213
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	38, 86, 271
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	88, 127, 269
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	2 cut(s)	127, 269
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	1 cut(s)	76
SfaNI	GCATC	2 cut(s)	96, 108
Sse9I	AATT	4 cut(s)	48, 110, 168, 240
SsiI	CCGC	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	158
TasI	AATT	4 cut(s)	48, 110, 168, 240
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	240
XceI	RCATGY	2 cut(s)	127, 269
XmnI	GAANNNNTTC	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.