Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

29839128 .. 29839367

Gene Structure 240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG292800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGTTGGCCTTTCGCTGGTGGTGATGGCGAAGTGACAACAATAGAAAATGCGAGAATCTACAACTCACATGTGATTAATCATGTCAAGGGTGGTACTGCGAAGAAACCTGAAGGTCCTATAGAAACTTACATATTTGCCATGTTCAATGAGAATGAGAAAACTGGAGCAGAGACTGAGAAGAATTTCGAGCTCTTTTTACCAACCGGAGATCCAGTTTATCCTATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

79

Amino Acids

8.76

Weight (kDa)

4.8

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 78	3.1e-20	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	148, 235
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	184
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	169, 215
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	169, 215
BshFI	GGCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	169, 215
BssMI	GATC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	71, 83, 142
CviJI	RGCY	2 cut(s)	10, 193
CviKI_1	RGCY	2 cut(s)	10, 193
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	3 cut(s)	74, 86, 145
FaiI	YATR	5 cut(s)	72, 84, 122, 134, 143
FatI	CATG	3 cut(s)	70, 82, 141
FriOI	GRGCYC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	3 cut(s)	74, 86, 145
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	74, 86, 145
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	5 cut(s)	3, 123, 150, 220, 228
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	115, 193
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	2 cut(s)	184, 229
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	1 cut(s)	78
MspI	CCGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	74, 86, 145
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	74
PciI	ACATGT	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	57
PpuMI	RGGWCCY	1 cut(s)	116
PscI	ACATGT	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	112, 118, 195
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	2 cut(s)	184, 229
SstI	GAGCTC	1 cut(s)	195
TaqI	TCGA	1 cut(s)	189
TasI	AATT	2 cut(s)	184, 229
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	116
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.