Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

29680333 .. 29682402

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG295500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGAAGACACTGCAAGATCTTTCAAAACTATGGTGGGATAACGAATCTGGTTCCAAGATTGGTGTTTGTTATGGAACCTTGGGAAATGACTTACCGCCAGCACAGGAAGTAATATCTATGTTCGACCAGTATAGAATTCAGAAAATCCGTCTCTATGATCCTAACCAAGGAGCTCTCCAAGCCCTTAGAGGCTCCAACATCGAGGTCATGCTTGGTGTTGAAAATGAACGCCTTCAAGACATTTCTTCTAGCCAAGACAAGGCTAATTCCTGGGTCCAAAGTAATGTCATAAACTATGGCAATGTCAATTTCAAATACATTGTTGTTGGAAACGAAATAGATCCTACAGGTCCTCAAGCATCATTTGTTGCCCCTGCAATGGAAAACATTCAAAAAGCAATTACTTCGGAGAATCTTGCCAGTAAAATCAAAGTCTCCACTGCCATTTCCACTGCCGTCCTCAAAGAACCCTCCTACCCTCCATCAAACGGATCATTCCGTACTGACCATTTACCATTTCTTAATCCCATCATCGCCTTCTTAGCACGCAACCAATCTCCACTGCTCGTTAATCTATACACTTATTTTACTTACAATCAAAACAGTCAGATTAATATCGAGTATGCTCTTTTTACATCTCCATCACCTGTAGTGCATGATGGCCAGCTTGGGTATCAAAACCTGTTTGATGCTATTCTCGATACAGTTTACTCGGCACTAGAGAGAGCTGCAGCGATTCCTTGGGAATCGTTGTATCGGAGTCTGGTTGGCCCTCTTCCGGTGGGGATGGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

266

Amino Acids

29.56

Weight (kDa)

5.12

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	21 - 244	1.6e-65	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	3 cut(s)	155, 338, 502
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	5 cut(s)	170, 262, 382, 491, 781
AgsI	TTSAA	5 cut(s)	27, 224, 239, 316, 395
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	176, 670, 731
AluI	AGCT	3 cut(s)	176, 670, 731
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	158, 442
AlwI	GGATC	3 cut(s)	155, 338, 502
AoxI	GGCC	2 cut(s)	664, 772
ApeKI	GCWGC	2 cut(s)	731, 734
ApoI	RAATTY	1 cut(s)	138
AseI	ATTAAT	1 cut(s)	615
Asp700I	GAANNNNTTC	2 cut(s)	234, 390
AspS9I	GGNCC	3 cut(s)	277, 353, 773
AsuHPI	GGTGA	1 cut(s)	639
AvaII	GGWCC	2 cut(s)	277, 353
BalI	TGGCCA	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	718, 746
BccI	CCATC	5 cut(s)	493, 539, 652, 656, 784
BceAI	ACGGC	1 cut(s)	443
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BciT130I	CCWGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	158, 442
BfaI	CTAG	2 cut(s)	252, 722
BfmI	CTRYAG	3 cut(s)	348, 651, 732
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	2 cut(s)	732, 735
BlsI	GCNGC	2 cut(s)	733, 736
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	2 cut(s)	277, 353
BmgT120I	GGNCC	3 cut(s)	277, 353, 773
BmiI	GGNNCC	4 cut(s)	55, 79, 196, 278
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	371, 682
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	617
BsaJI	CCNNGG	4 cut(s)	81, 169, 273, 743
BsaWI	WCCGGW	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	5 cut(s)	170, 262, 382, 491, 781
Bse1I	ACTGG	2 cut(s)	130, 423
Bse3DI	GCAATG	2 cut(s)	310, 387
Bse8I	GATNNNNATC	1 cut(s)	617
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	4 cut(s)	81, 169, 273, 743
BseGI	GGATG	1 cut(s)	795
BseJI	GATNNNNATC	1 cut(s)	617
BseLI	CCNNNNNNNGG	5 cut(s)	170, 262, 382, 491, 781
BseMI	GCAATG	2 cut(s)	310, 387
BseNI	ACTGG	2 cut(s)	130, 423
BseXI	GCAGC	2 cut(s)	718, 746
BshFI	GGCC	2 cut(s)	666, 774
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	782
BslI	CCNNNNNNNGG	5 cut(s)	170, 262, 382, 491, 781
BsmAI	GTCTC	2 cut(s)	158, 442
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	666, 774
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	19, 160, 343, 494
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	2 cut(s)	666, 774
BspLI	GGNNCC	4 cut(s)	55, 79, 196, 278
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	3 cut(s)	155, 338, 502
BsrDI	GCAATG	2 cut(s)	310, 387
BsrI	ACTGG	2 cut(s)	130, 423
BssECI	CCNNGG	4 cut(s)	81, 169, 273, 743
BssMI	GATC	4 cut(s)	19, 160, 343, 494
BssT1I	CCWWGG	3 cut(s)	81, 169, 743
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	608, 709
Bst6I	CTCTTC	1 cut(s)	783
BstC8I	GCNNGC	3 cut(s)	102, 550, 668
BstDEI	CTNAG	2 cut(s)	188, 544
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	795
BstKTI	GATC	4 cut(s)	22, 163, 346, 497
BstMAI	GTCTC	2 cut(s)	158, 442
BstMBI	GATC	4 cut(s)	19, 160, 343, 494
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 545
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	3 cut(s)	348, 651, 732
BstV1I	GCAGC	2 cut(s)	718, 746
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	19, 343
BstYI	RGATCY	2 cut(s)	19, 343
BsuRI	GGCC	2 cut(s)	666, 774
BtgZI	GCGATG	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	795
BtsI	GCAGTG	4 cut(s)	11, 441, 453, 563
BtsIMutI	CAGTG	4 cut(s)	11, 441, 453, 563
Cac8I	GCNNGC	3 cut(s)	102, 550, 668
Cfr13I	GGNCC	3 cut(s)	277, 353, 773
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	2 cut(s)	211, 659
CviJI	RGCY	9 cut(s)	176, 185, 195, 255, 266, 666, 670, 731, 774
CviKI_1	RGCY	9 cut(s)	176, 185, 195, 255, 266, 666, 670, 731, 774
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	2 cut(s)	188, 544
DpnI	GATC	4 cut(s)	21, 162, 345, 496
DpnII	GATC	4 cut(s)	19, 160, 343, 494
EaeI	YGGCCR	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	3 cut(s)	81, 169, 743
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	277, 353
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	272
EcoT14I	CCWWGG	3 cut(s)	81, 169, 743
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	3 cut(s)	81, 169, 743
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	214, 662
FatI	CATG	2 cut(s)	210, 658
Fnu4HI	GCNGC	2 cut(s)	732, 735
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	732, 735
FspBI	CTAG	2 cut(s)	252, 722
GluI	GCNGC	2 cut(s)	732, 735
HaeIII	GGCC	2 cut(s)	666, 774
HapII	CCGG	1 cut(s)	782
Hin1II	CATG	2 cut(s)	214, 662
HinfI	GANTC	5 cut(s)	47, 415, 739, 749, 763
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	1 cut(s)	639
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	4 cut(s)	144, 412, 612, 762
Hpy188III	TCNNGA	2 cut(s)	239, 701
Hpy8I	GTNNAC	1 cut(s)	712
HpyAV	CCTTC	2 cut(s)	245, 550
HpyCH4III	ACNGT	2 cut(s)	608, 709
HpyCH4V	TGCA	4 cut(s)	16, 380, 658, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 545
HpyF3I	CTNAG	2 cut(s)	188, 544
Hsp92II	CATG	2 cut(s)	214, 662
Kzo9I	GATC	4 cut(s)	19, 160, 343, 494
LmnI	GCTCC	2 cut(s)	173, 200
Lsp1109I	GCAGC	2 cut(s)	718, 746
LweI	GCATC	2 cut(s)	371, 682
MaeI	CTAG	2 cut(s)	252, 722
MalI	GATC	4 cut(s)	21, 162, 345, 496
MboI	GATC	4 cut(s)	19, 160, 343, 494
MboII	GAAGA	4 cut(s)	16, 19, 240, 770
MflI	RGATCY	2 cut(s)	19, 343
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	666
MluCI	AATT	4 cut(s)	138, 268, 310, 402
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	1 cut(s)	772
MmeI	TCCRAC	2 cut(s)	222, 310
MnlI	CCTC	7 cut(s)	185, 199, 366, 473, 484, 492, 786
Mox20I	TGGCCA	1 cut(s)	666
MroXI	GAANNNNTTC	2 cut(s)	234, 390
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	3 cut(s)	525, 573, 615
Msp20I	TGGCCA	1 cut(s)	666
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	182, 545
NdeII	GATC	4 cut(s)	19, 160, 343, 494
NlaIII	CATG	2 cut(s)	214, 662
NlaIV	GGNNCC	4 cut(s)	55, 79, 196, 278
NmeAIII	GCCGAG	1 cut(s)	695
PdmI	GAANNNNTTC	2 cut(s)	234, 390
PfeI	GAWTC	4 cut(s)	47, 415, 739, 749
PkrI	GCNGC	2 cut(s)	733, 736
PleI	GAGTC	1 cut(s)	771
PpsI	GAGTC	1 cut(s)	771
PpuMI	RGGWCCY	1 cut(s)	353
PshBI	ATTAAT	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	4 cut(s)	55, 79, 196, 278
PspPI	GGNCC	3 cut(s)	277, 353, 773
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	19, 343
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	3 cut(s)	525, 573, 615
SatI	GCNGC	2 cut(s)	732, 735
Sau3AI	GATC	4 cut(s)	19, 160, 343, 494
Sau96I	GGNCC	3 cut(s)	277, 353, 773
SchI	GAGTC	1 cut(s)	772
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	8 cut(s)	83, 178, 210, 355, 652, 672, 687, 733
SfaNI	GCATC	2 cut(s)	371, 682
SfcI	CTRYAG	3 cut(s)	348, 651, 732
SinI	GGWCC	2 cut(s)	277, 353
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	4 cut(s)	138, 268, 310, 402
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	2 cut(s)	252, 722
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	3 cut(s)	81, 169, 743
TaaI	ACNGT	2 cut(s)	608, 709
TaqI	TCGA	4 cut(s)	126, 204, 621, 702
TasI	AATT	4 cut(s)	138, 268, 310, 402
TfiI	GAWTC	4 cut(s)	47, 415, 739, 749
Tru1I	TTAA	3 cut(s)	525, 573, 615
Tru9I	TTAA	3 cut(s)	525, 573, 615
TscAI	CASTG	4 cut(s)	18, 448, 460, 570
TseI	GCWGC	2 cut(s)	731, 734
TspDTI	ATGAA	2 cut(s)	17, 243
TspGWI	ACGGA	3 cut(s)	140, 491, 507
TspRI	CASTG	4 cut(s)	18, 448, 460, 570
VpaK11BI	GGWCC	2 cut(s)	277, 353
VspI	ATTAAT	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	138
XmnI	GAANNNNTTC	2 cut(s)	234, 390
XspI	CTAG	2 cut(s)	252, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.