Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

16860642 .. 16861537

Gene Structure 896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTACTATATTTCTTCCATTCACGACTAGAATGGGACTTCTGGTGGCAATCCTTTCTATACCAGGTGTGCAATCATCAGTAGGTGTTTGTTATGGAATGATGGGCAACAACCTCCCTTCCCACTCGGAAGTCATATCTTTCTACAAATCAAATAAGATCAACCGGATGAGACTCTATGACCCAAACCACGGTGCTCTTGAAGATATCCGAGGCTCCAACATCGAACTCATCCTCGGTGTCCCAAACTCGCTCCTTCAGGACTTCGCTAAAAACCCCTCCAATGCCCAAAATTGGGTAAAAACAAATGTCCTCAACTTCTACCCTAGCGTCAGAATCAAGTACATAGCTATTGGAAATGAAGTAAGCCCCGTTAACGGAGACGCATCTCTGGCTCAGTTCCTCCTCCCCGCCATGCAGCACGTGTACCAGGCAGTCAGAGCAGCCAACCTACATGACCTAATCAAGGTCTCAACCGCCATCGACACGACCTTAATAGGAGTCTATCTTACCCTCCATCCCAAGGAGCATTTCGTGGTGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002215 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009817 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

182

Amino Acids

19.92

Weight (kDa)

8.71

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	28 - 167	1e-42	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	411, 477
AcuI	CTGAAG	1 cut(s)	242
AcvI	CACGTG	1 cut(s)	424
AfaI	GTAC	2 cut(s)	344, 428
AfiI	CCNNNNNNNGG	6 cut(s)	191, 294, 295, 377, 466, 523
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	1 cut(s)	203
AjiI	CACGTC	1 cut(s)	543
AjnI	CCWGG	2 cut(s)	64, 429
AjuI	GAANNNNNNNTTGG	1 cut(s)	515
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	3 cut(s)	166, 375, 475
ApeKI	GCWGC	2 cut(s)	418, 443
BbrPI	CACGTG	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	430, 455
BccI	CCATC	3 cut(s)	97, 488, 525
BciT130I	CCWGG	2 cut(s)	66, 431
BcoDI	GTCTC	3 cut(s)	166, 375, 475
BfaI	CTAG	2 cut(s)	30, 327
BisI	GCNGC	2 cut(s)	419, 444
BlsI	GCNGC	2 cut(s)	420, 445
Bme1390I	CCNGG	2 cut(s)	66, 431
BmgBI	CACGTC	1 cut(s)	543
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	66, 431
BmsI	GCATC	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	4 cut(s)	190, 211, 235, 522
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	6 cut(s)	191, 294, 295, 377, 466, 523
BseBI	CCWGG	2 cut(s)	66, 431
BseDI	CCNNGG	4 cut(s)	190, 211, 235, 522
BseGI	GGATG	3 cut(s)	174, 231, 517
BseLI	CCNNNNNNNGG	6 cut(s)	191, 294, 295, 377, 466, 523
BseMII	CTCAG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	430, 455
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	2 cut(s)	51, 227
BslI	CCNNNNNNNGG	6 cut(s)	191, 294, 295, 377, 466, 523
BsmAI	GTCTC	3 cut(s)	166, 375, 475
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	51, 227
Bso31I	GGTCTC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	2 cut(s)	411, 477
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	475
BssECI	CCNNGG	4 cut(s)	190, 211, 235, 522
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	66, 431
Bst4CI	ACNGT	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	190
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	174, 231, 517
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	3 cut(s)	166, 375, 475
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 440
BstNI	CCWGG	2 cut(s)	66, 431
BstSCI	CCNGG	2 cut(s)	64, 429
BstV1I	GCAGC	2 cut(s)	430, 455
BtgI	CCRYGG	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	543
BtsCI	GGATG	3 cut(s)	174, 231, 517
CseI	GACGC	2 cut(s)	319, 392
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	343, 427
CviAII	CATG	2 cut(s)	415, 455
CviJI	RGCY	6 cut(s)	5, 216, 350, 369, 395, 446
CviKI_1	RGCY	6 cut(s)	5, 216, 350, 369, 395, 446
CviQI	GTAC	2 cut(s)	343, 427
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	242
Eco72I	CACGTG	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	64, 429
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	2 cut(s)	418, 458
FaiI	YATR	8 cut(s)	11, 62, 96, 137, 180, 347, 416, 456
FaqI	GGGAC	2 cut(s)	51, 227
FatI	CATG	2 cut(s)	414, 454
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	419, 444
FokI	GGATG	3 cut(s)	181, 218, 504
Fsp4HI	GCNGC	2 cut(s)	419, 444
FspBI	CTAG	2 cut(s)	30, 327
GluI	GCNGC	2 cut(s)	419, 444
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	2 cut(s)	319, 392
Hin1II	CATG	2 cut(s)	418, 458
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	174, 336, 501
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	376, 427
Hpy188I	TCNGA	4 cut(s)	130, 212, 335, 440
Hpy188III	TCNNGA	3 cut(s)	25, 200, 260
Hpy8I	GTNNAC	2 cut(s)	376, 427
HpyAV	CCTTC	2 cut(s)	129, 266
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	2 cut(s)	423, 542
HpyCH4V	TGCA	2 cut(s)	73, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 440
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	423, 542
Hsp92II	CATG	2 cut(s)	418, 458
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	3 cut(s)	221, 258, 526
LpnPI	CCDG	8 cut(s)	29, 51, 78, 179, 245, 377, 416, 443
Lsp1109I	GCAGC	2 cut(s)	430, 455
LweI	GCATC	1 cut(s)	395
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	2 cut(s)	30, 327
MaeII	ACGT	2 cut(s)	423, 542
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	8, 215
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	292
MlyI	GAGTC	2 cut(s)	168, 510
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	8 cut(s)	125, 206, 245, 289, 323, 413, 416, 524
MseI	TTAA	2 cut(s)	375, 494
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	66, 431
MvaI	CCWGG	2 cut(s)	66, 431
MwoI	GCNNNNNNNGC	2 cut(s)	392, 440
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	418, 458
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	420, 445
PleI	GAGTC	2 cut(s)	168, 509
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
PpsI	GAGTC	2 cut(s)	168, 509
Ppu21I	YACGTR	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	64, 429
PspCI	CACGTG	1 cut(s)	424
PspGI	CCWGG	2 cut(s)	64, 429
PspN4I	GGNNCC	1 cut(s)	217
RsaI	GTAC	2 cut(s)	344, 428
RsaNI	GTAC	2 cut(s)	343, 427
SaqAI	TTAA	2 cut(s)	375, 494
SatI	GCNGC	2 cut(s)	419, 444
Sau3AI	GATC	1 cut(s)	159
SchI	GAGTC	2 cut(s)	168, 510
ScrFI	CCNGG	2 cut(s)	66, 431
SduI	GDGCHC	1 cut(s)	199
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	395
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	411, 477
SspMI	CTAG	2 cut(s)	30, 327
StyD4I	CCNGG	2 cut(s)	64, 429
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	2 cut(s)	426, 545
TaqI	TCGA	2 cut(s)	225, 483
TasI	AATT	1 cut(s)	292
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	375, 494
Tru9I	TTAA	2 cut(s)	375, 494
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	418, 443
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	1 cut(s)	375
TspGWI	ACGGA	1 cut(s)	393
XagI	CCTNNNNNAGG	1 cut(s)	464
XspI	CTAG	2 cut(s)	30, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.