Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017706.1

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1552

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017706.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1100 bp

atggctactatatttcttccattcacgactagcatcatgtttcttttgggacttctggtggcaatcctttcaataccaggcgcacaatcatcagtaggtgtttgttatggaatgatgggcaacaacctcccttcccactcggaagtcatatctctctacaaatcaaacaagatcaaccggatgagactctatgacccaaaccacggtgctcttgaagctctccgaggctccaacatcgaactcattctcggtgttccaaactcgctccttcaggacttcgctaaaaacccctccaatgcccaaaattgggtaaaaacaaatgtcctcaacttctaccctagcgtcagaatcaagtacattgccgttggaaatgaagtaagccccgttaacggagacacatctctggctcagttcctcctccccgccatgcagcacgtgtaccaggcagtcagagcagccaacctacatgaccgaatcaaggtctcaaccgccatcgacacgaccttaataggagtctcttaccctccatcccaaggagcatttcgtggtgacgtgagaggctatctggacccaattatcggctacttggtttatgctaaagcaccactgcttgctaacatatacacatattttagttatgttgggaaccctagagacatctctcttccttacgccttgttcacttcgccttcggttgttgcttgggatggtaataaaggataccaaaacctgtttgatgcgatgctggatgctttgtactcggctcttgagagagcatggggtggttctttggaggttgttgtgtccgaaagcgggtggccttcggcaggtggctttggaacgtctcctgagaatgctcagacttattactccaaattgattcagcatgtgaaggggggcaccccaaagaggcctggtagagccatagagacttacttgtttgccatgtttgatgagaaccagaaaaacccagagctggagaaacactttggggttttctaccctaataaacagtcaaagtatcacctcagtttcgggggaggaagactagaaactagtacttctgctgagtataatgttactagttccctcaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002215 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009817 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

366

Amino Acids

40.13

Weight (kDa)

8.67

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	818
Acc36I	ACCTGC	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	899
AciI	CCGC	3 cut(s)	423, 489, 813
AcuI	CTGAAG	1 cut(s)	254
AcvI	CACGTG	1 cut(s)	436
AfaI	GTAC	4 cut(s)	356, 440, 758, 1060
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	72, 215
AhlI	ACTAGT	2 cut(s)	1055, 1082
AjiI	CACGTC	1 cut(s)	553
AjnI	CCWGG	3 cut(s)	76, 441, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	2 cut(s)	218, 976
AluI	AGCT	2 cut(s)	218, 976
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	7 cut(s)	178, 387, 487, 520, 648, 849, 923
AoxI	GGCC	2 cut(s)	818, 911
ApeKI	GCWGC	2 cut(s)	430, 455
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	560, 1016
AvaII	GGWCC	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	902
BanI	GGYRCC	1 cut(s)	899
BbrPI	CACGTG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	1051
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	442, 467
BccI	CCATC	4 cut(s)	109, 500, 535, 701
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	3 cut(s)	78, 443, 915
BciVI	GTATCC	1 cut(s)	713
BcoDI	GTCTC	7 cut(s)	178, 387, 487, 520, 648, 849, 923
BcuI	ACTAGT	2 cut(s)	1055, 1082
BfaI	CTAG	6 cut(s)	30, 339, 651, 1049, 1056, 1083
BfuAI	ACCTGC	1 cut(s)	818
BfuI	GTATCC	1 cut(s)	713
BisI	GCNGC	2 cut(s)	431, 456
BlsI	GCNGC	2 cut(s)	432, 457
BmcAI	AGTACT	1 cut(s)	1060
Bme1390I	CCNGG	3 cut(s)	78, 443, 915
Bme18I	GGWCC	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	4 cut(s)	229, 570, 647, 901
BmrFI	CCNGG	3 cut(s)	78, 443, 915
BmsI	GCATC	4 cut(s)	42, 727, 732, 739
BpiI	GAAGAC	1 cut(s)	1051
BpmI	CTGGAG	1 cut(s)	998
BpuEI	CTTGAG	2 cut(s)	788, 1076
BsaAI	YACGTR	1 cut(s)	436
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	202, 223, 532
BsaWI	WCCGGW	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	78, 443, 915
BseDI	CCNNGG	3 cut(s)	202, 223, 532
BseGI	GGATG	4 cut(s)	186, 527, 712, 754
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	5 cut(s)	422, 840, 872, 1042, 1059
BseRI	GAGGAG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	2 cut(s)	442, 467
BshFI	GGCC	2 cut(s)	820, 913
BshNI	GGYRCC	1 cut(s)	899
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	63
BsmAI	GTCTC	7 cut(s)	178, 387, 487, 520, 648, 849, 923
BsmBI	CGTCTC	1 cut(s)	849
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	2 cut(s)	820, 913
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	2 cut(s)	211, 902
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	3 cut(s)	423, 489, 813
BspANI	GGCC	2 cut(s)	820, 913
BspCNI	CTCAG	5 cut(s)	421, 841, 871, 1041, 1060
BspLI	GGNNCC	4 cut(s)	229, 570, 647, 901
BspMI	ACCTGC	1 cut(s)	818
BspT107I	GGYRCC	1 cut(s)	899
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	3 cut(s)	202, 223, 532
BssMI	GATC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	3 cut(s)	78, 443, 915
Bst4CI	ACNGT	2 cut(s)	206, 1014
Bst6I	CTCTTC	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	5 cut(s)	408, 849, 858, 1028, 1068
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	4 cut(s)	186, 527, 712, 754
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	7 cut(s)	178, 387, 487, 520, 648, 849, 923
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 452
BstNI	CCWGG	3 cut(s)	78, 443, 915
BstNSI	RCATGY	1 cut(s)	890
BstSCI	CCNGG	3 cut(s)	76, 441, 913
BstSLI	GKGCMC	1 cut(s)	902
BstV1I	GCAGC	2 cut(s)	442, 467
BstV2I	GAAGAC	1 cut(s)	1051
BsuI	GTATCC	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	820, 913
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	755
BtrI	CACGTC	1 cut(s)	553
BtsCI	GGATG	4 cut(s)	186, 527, 712, 754
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	605
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	1 cut(s)	612
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	568
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	4 cut(s)	355, 439, 757, 1059
CviAII	CATG	6 cut(s)	37, 427, 467, 777, 887, 946
CviQI	GTAC	4 cut(s)	355, 439, 757, 1059
DdeI	CTNAG	5 cut(s)	408, 849, 858, 1028, 1068
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	532
Eco147I	AGGCCT	1 cut(s)	913
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	254
Eco72I	CACGTG	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoRII	CCWGG	3 cut(s)	76, 441, 913
EcoT14I	CCWWGG	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	849
FaeI	CATG	6 cut(s)	40, 430, 470, 780, 890, 949
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	6 cut(s)	36, 426, 466, 776, 886, 945
FauI	CCCGC	2 cut(s)	430, 806
Fnu4HI	GCNGC	2 cut(s)	431, 456
FokI	GGATG	4 cut(s)	193, 514, 719, 761
Fsp4HI	GCNGC	2 cut(s)	431, 456
FspBI	CTAG	6 cut(s)	30, 339, 651, 1049, 1056, 1083
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	2 cut(s)	431, 456
GsuI	CTGGAG	1 cut(s)	998
HaeIII	GGCC	2 cut(s)	820, 913
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	6 cut(s)	40, 430, 470, 780, 890, 949
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	5 cut(s)	186, 348, 474, 513, 880
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	560, 1016
Hpy166II	GTNNAC	3 cut(s)	388, 439, 681
Hpy188I	TCNGA	6 cut(s)	142, 224, 347, 452, 808, 861
Hpy188III	TCNNGA	7 cut(s)	25, 212, 272, 566, 767, 848, 1093
Hpy8I	GTNNAC	3 cut(s)	388, 439, 681
HpyAV	CCTTC	5 cut(s)	141, 278, 699, 831, 886
HpyCH4III	ACNGT	2 cut(s)	206, 1014
HpyCH4IV	ACGT	3 cut(s)	435, 552, 842
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 452
HpyF3I	CTNAG	5 cut(s)	408, 849, 858, 1028, 1068
HpySE526I	ACGT	3 cut(s)	435, 552, 842
Hsp92II	CATG	6 cut(s)	40, 430, 470, 780, 890, 949
HspAI	GCGC	1 cut(s)	81
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	233, 270, 536
Lsp1109I	GCAGC	2 cut(s)	442, 467
LweI	GCATC	4 cut(s)	42, 727, 732, 739
MaeI	CTAG	6 cut(s)	30, 339, 651, 1049, 1056, 1083
MaeII	ACGT	3 cut(s)	435, 552, 842
MaeIII	GTNAC	2 cut(s)	548, 1078
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	8, 656, 1056
MhlI	GDGCHC	2 cut(s)	211, 902
MluCI	AATT	3 cut(s)	304, 573, 875
MlyI	GAGTC	2 cut(s)	180, 522
MmeI	TCCRAC	2 cut(s)	255, 346
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	2 cut(s)	387, 506
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	3 cut(s)	78, 443, 915
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	3 cut(s)	78, 443, 915
MwoI	GCNNNNNNNGC	2 cut(s)	215, 452
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	6 cut(s)	40, 430, 470, 780, 890, 949
NlaIV	GGNNCC	4 cut(s)	229, 570, 647, 901
NmeAIII	GCCGAG	1 cut(s)	740
NmuCI	GTSAC	1 cut(s)	548
NspI	RCATGY	1 cut(s)	890
PaqCI	CACCTGC	1 cut(s)	818
PceI	AGGCCT	1 cut(s)	913
PctI	GAATGC	1 cut(s)	859
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	348, 474, 880
PkrI	GCNGC	2 cut(s)	432, 457
PleI	GAGTC	2 cut(s)	180, 521
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	2 cut(s)	180, 521
Ppu21I	YACGTR	1 cut(s)	436
Psp6I	CCWGG	3 cut(s)	76, 441, 913
PspCI	CACGTG	1 cut(s)	436
PspGI	CCWGG	3 cut(s)	76, 441, 913
PspN4I	GGNNCC	4 cut(s)	229, 570, 647, 901
PspPI	GGNCC	1 cut(s)	568
RsaI	GTAC	4 cut(s)	356, 440, 758, 1060
RsaNI	GTAC	4 cut(s)	355, 439, 757, 1059
SaqAI	TTAA	2 cut(s)	387, 506
SatI	GCNGC	2 cut(s)	431, 456
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	568
ScaI	AGTACT	1 cut(s)	1060
SchI	GAGTC	2 cut(s)	180, 522
ScrFI	CCNGG	3 cut(s)	78, 443, 915
SduI	GDGCHC	2 cut(s)	211, 902
SfaNI	GCATC	4 cut(s)	42, 727, 732, 739
SinI	GGWCC	1 cut(s)	568
SmlI	CTYRAG	2 cut(s)	767, 1091
SmoI	CTYRAG	2 cut(s)	767, 1091
SpeI	ACTAGT	2 cut(s)	1055, 1082
Sse9I	AATT	3 cut(s)	304, 573, 875
SseBI	AGGCCT	1 cut(s)	913
SsiI	CCGC	3 cut(s)	423, 489, 813
SspMI	CTAG	6 cut(s)	30, 339, 651, 1049, 1056, 1083
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	3 cut(s)	76, 441, 913
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	206, 1014
TaiI	ACGT	3 cut(s)	438, 555, 845
TaqI	TCGA	2 cut(s)	237, 495
TaqII	GACCGA	1 cut(s)	486
TasI	AATT	3 cut(s)	304, 573, 875
TatI	WGTACW	3 cut(s)	354, 756, 1058
TfiI	GAWTC	3 cut(s)	348, 474, 880
Tru1I	TTAA	2 cut(s)	387, 506
Tru9I	TTAA	2 cut(s)	387, 506
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	2 cut(s)	430, 455
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	612
VpaK11BI	GGWCC	1 cut(s)	568
XagI	CCTNNNNNAGG	1 cut(s)	825
XceI	RCATGY	1 cut(s)	890
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	6 cut(s)	30, 339, 651, 1049, 1056, 1083
ZrmI	AGTACT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.