Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

48499059 .. 48500569

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTATGGCTACTATATTTCTTCCATTCACGACTAACATCATGTTTCTTTTGGGACTTCTGGTGGCAATCCTTTCTATACCAGGCGCACAATCATCAGTAGGTGTTTGTTATGGAATGATGGGCAACAACCTCCCTTCCCACTCGGAAGTCATATCTCTCTACAAATCAAACAAGATCAACCGGATGAGACTCTATGACTCAAACCACGGTGCTCTTGAAGCTCTCCGAGGCTCCAACATCGAAGTCATCCTCGGTGTTCCAAACTCGCTCCTTCAGGACTTCGCTAAAAACCCCTCCAATGCCCAAAATTGGGTAAAAACAAATGTCCTCGACTTCTACCCTAGCGTCAGAATCAAGTACATTGCCGTTGGAAATGAAGTAAGCCCCGTTAACGGAGACACATCTCTCGCTCAGTTCCTCCTCCCCGCCATGCAGCACGTGTACCAGGCAGTCAGAGCAGCCAACCTACATGACCGAATCAAGGTCTCAACCGCCATCGACACGACCTTAATAGGAGTCTCTTACCCTCCATCCCAAGGAGCATTTCGTGGTGACGTGAGAGGCTATCTGGACCCAATTATCGGCTACTTGGTTTATGCTAAAGCACCACTGCTTGCTAACATATACACATATTTTAGTTATGTTGGGAACCCTAGGGACATCTCTCTTCCTTACGCCTTGTTCACTTCGCCTTCGGTTGTTGCTTGGGATGGTAATAAAGGATACCAAAACCTGTTTGATGCGATGCTGGATGCTTTGTACTCGGCTCTTGAGAGAGCATGGGGTGGTTCTTTGGAGGTTGTTGTATCCGAAAGCGGGTGGCCTTCGGCAGGTGGCTTTGGAACGTCTCCTGAGAATGCTCGGACTTATTACTCCAAATTGATTCAGCATGTGAAAGGAGGCACCCCAAAGAGGCCTGGTAGAGCCATAGAGACTTACTTGTTTGCCATGTTTGATGAGAACCAGAAAAACCCAGAGCTGGAGAAACACTTTGGGGTTTTCTACCCTAATAAACAGTCAAAGTATCACCTCAGTTTCGGGGAAGGAAGACTAGAAACTAGTACTTCTGCTGAGTATAATGTTACTAGTTCCCTCAAGAGTGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002215 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009817 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

370

Amino Acids

40.66

Weight (kDa)

7.76

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	34 - 347	1.4e-116	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	824
AccB1I	GGYRCC	1 cut(s)	905
AciI	CCGC	3 cut(s)	429, 495, 819
AcuI	CTGAAG	1 cut(s)	260
AcvI	CACGTG	1 cut(s)	442
AfaI	GTAC	4 cut(s)	362, 446, 764, 1066
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	1 cut(s)	221
AhlI	ACTAGT	2 cut(s)	1061, 1088
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	3 cut(s)	82, 447, 919
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AluBI	AGCT	2 cut(s)	224, 982
AluI	AGCT	2 cut(s)	224, 982
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	6 cut(s)	184, 393, 493, 526, 855, 929
AoxI	GGCC	2 cut(s)	824, 917
ApeKI	GCWGC	2 cut(s)	436, 461
AspA2I	CCTAGG	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	2 cut(s)	566, 1022
AvaII	GGWCC	1 cut(s)	574
AvrII	CCTAGG	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	905
BbrPI	CACGTG	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	1057
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	448, 473
BccI	CCATC	4 cut(s)	115, 506, 541, 707
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	3 cut(s)	84, 449, 921
BciVI	GTATCC	2 cut(s)	719, 820
BcoDI	GTCTC	6 cut(s)	184, 393, 493, 526, 855, 929
BcuI	ACTAGT	2 cut(s)	1061, 1088
BfaI	CTAG	5 cut(s)	345, 657, 1055, 1062, 1089
BfuAI	ACCTGC	1 cut(s)	824
BfuI	GTATCC	2 cut(s)	719, 820
BisI	GCNGC	2 cut(s)	437, 462
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	2 cut(s)	438, 463
BmcAI	AGTACT	1 cut(s)	1066
Bme1390I	CCNGG	3 cut(s)	84, 449, 921
Bme18I	GGWCC	1 cut(s)	574
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	4 cut(s)	235, 576, 653, 907
BmrFI	CCNGG	3 cut(s)	84, 449, 921
BmsI	GCATC	3 cut(s)	733, 738, 745
BpiI	GAAGAC	1 cut(s)	1057
BpmI	CTGGAG	1 cut(s)	1004
BpuEI	CTTGAG	2 cut(s)	794, 1082
BsaAI	YACGTR	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	5 cut(s)	208, 229, 253, 538, 656
BsaWI	WCCGGW	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	84, 449, 921
BseDI	CCNNGG	5 cut(s)	208, 229, 253, 538, 656
BseGI	GGATG	5 cut(s)	192, 249, 533, 718, 760
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	4 cut(s)	428, 846, 1048, 1065
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	448, 473
BshFI	GGCC	2 cut(s)	826, 919
BshNI	GGYRCC	1 cut(s)	905
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	2 cut(s)	69, 674
BsmAI	GTCTC	6 cut(s)	184, 393, 493, 526, 855, 929
BsmBI	CGTCTC	1 cut(s)	855
BsmFI	GGGAC	2 cut(s)	69, 674
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	2 cut(s)	826, 919
Bso31I	GGTCTC	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	3 cut(s)	429, 495, 819
BspANI	GGCC	2 cut(s)	826, 919
BspCNI	CTCAG	4 cut(s)	427, 847, 1047, 1066
BspLI	GGNNCC	4 cut(s)	235, 576, 653, 907
BspMI	ACCTGC	1 cut(s)	824
BspT107I	GGYRCC	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	363
BssECI	CCNNGG	5 cut(s)	208, 229, 253, 538, 656
BssMI	GATC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	538, 656
Bst2UI	CCWGG	3 cut(s)	84, 449, 921
Bst4CI	ACNGT	2 cut(s)	212, 1020
Bst6I	CTCTTC	1 cut(s)	675
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	4 cut(s)	414, 855, 1034, 1074
BstDSI	CCRYGG	1 cut(s)	208
BstENI	CCTNNNNNAGG	1 cut(s)	831
BstF5I	GGATG	5 cut(s)	192, 249, 533, 718, 760
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	6 cut(s)	184, 393, 493, 526, 855, 929
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 458
BstNI	CCWGG	3 cut(s)	84, 449, 921
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	3 cut(s)	82, 447, 919
BstV1I	GCAGC	2 cut(s)	448, 473
BstV2I	GAAGAC	1 cut(s)	1057
BsuI	GTATCC	2 cut(s)	719, 820
BsuRI	GGCC	2 cut(s)	826, 919
BtgI	CCRYGG	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	761
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	5 cut(s)	192, 249, 533, 718, 760
BtsI	GCAGTG	1 cut(s)	611
BtsIMutI	CAGTG	1 cut(s)	611
BveI	ACCTGC	1 cut(s)	824
Cac8I	GCNNGC	1 cut(s)	618
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	574
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	4 cut(s)	361, 445, 763, 1065
CviAII	CATG	6 cut(s)	43, 433, 473, 783, 893, 952
CviQI	GTAC	4 cut(s)	361, 445, 763, 1065
DdeI	CTNAG	4 cut(s)	414, 855, 1034, 1074
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Eco130I	CCWWGG	2 cut(s)	538, 656
Eco147I	AGGCCT	1 cut(s)	919
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	260
Eco72I	CACGTG	1 cut(s)	442
EcoNI	CCTNNNNNAGG	1 cut(s)	831
EcoRII	CCWGG	3 cut(s)	82, 447, 919
EcoT14I	CCWWGG	2 cut(s)	538, 656
ErhI	CCWWGG	2 cut(s)	538, 656
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	6 cut(s)	46, 436, 476, 786, 896, 955
FaqI	GGGAC	2 cut(s)	69, 674
FatI	CATG	6 cut(s)	42, 432, 472, 782, 892, 951
FauI	CCCGC	2 cut(s)	436, 812
Fnu4HI	GCNGC	2 cut(s)	437, 462
FokI	GGATG	5 cut(s)	199, 236, 520, 725, 767
Fsp4HI	GCNGC	2 cut(s)	437, 462
FspBI	CTAG	5 cut(s)	345, 657, 1055, 1062, 1089
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	2 cut(s)	437, 462
GsuI	CTGGAG	1 cut(s)	1004
HaeIII	GGCC	2 cut(s)	826, 919
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	6 cut(s)	46, 436, 476, 786, 896, 955
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	6 cut(s)	192, 200, 354, 480, 519, 886
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	566, 1022
Hpy166II	GTNNAC	3 cut(s)	394, 445, 687
Hpy188I	TCNGA	6 cut(s)	148, 230, 353, 458, 814, 867
Hpy188III	TCNNGA	7 cut(s)	31, 218, 278, 572, 773, 854, 1099
Hpy8I	GTNNAC	3 cut(s)	394, 445, 687
HpyAV	CCTTC	5 cut(s)	147, 284, 705, 837, 1040
HpyCH4III	ACNGT	2 cut(s)	212, 1020
HpyCH4IV	ACGT	3 cut(s)	441, 558, 848
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 458
HpyF3I	CTNAG	4 cut(s)	414, 855, 1034, 1074
HpySE526I	ACGT	3 cut(s)	441, 558, 848
Hsp92II	CATG	6 cut(s)	46, 436, 476, 786, 896, 955
HspAI	GCGC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	239, 276, 542
Lsp1109I	GCAGC	2 cut(s)	448, 473
LweI	GCATC	3 cut(s)	733, 738, 745
MaeI	CTAG	5 cut(s)	345, 657, 1055, 1062, 1089
MaeII	ACGT	3 cut(s)	441, 558, 848
MaeIII	GTNAC	2 cut(s)	554, 1084
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	3 cut(s)	14, 662, 1062
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	3 cut(s)	310, 579, 881
MlyI	GAGTC	3 cut(s)	186, 194, 528
MmeI	TCCRAC	2 cut(s)	261, 352
MseI	TTAA	3 cut(s)	393, 512, 1111
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	3 cut(s)	84, 449, 921
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	3 cut(s)	84, 449, 921
MwoI	GCNNNNNNNGC	2 cut(s)	221, 458
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	6 cut(s)	46, 436, 476, 786, 896, 955
NlaIV	GGNNCC	4 cut(s)	235, 576, 653, 907
NmeAIII	GCCGAG	1 cut(s)	746
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	1 cut(s)	896
PaqCI	CACCTGC	1 cut(s)	824
PceI	AGGCCT	1 cut(s)	919
PctI	GAATGC	1 cut(s)	865
PfeI	GAWTC	3 cut(s)	354, 480, 886
PkrI	GCNGC	2 cut(s)	438, 463
PleI	GAGTC	3 cut(s)	186, 194, 527
PmaCI	CACGTG	1 cut(s)	442
PmlI	CACGTG	1 cut(s)	442
PpsI	GAGTC	3 cut(s)	186, 194, 527
Ppu21I	YACGTR	1 cut(s)	442
Psp6I	CCWGG	3 cut(s)	82, 447, 919
PspCI	CACGTG	1 cut(s)	442
PspGI	CCWGG	3 cut(s)	82, 447, 919
PspN4I	GGNNCC	4 cut(s)	235, 576, 653, 907
PspPI	GGNCC	1 cut(s)	574
RsaI	GTAC	4 cut(s)	362, 446, 764, 1066
RsaNI	GTAC	4 cut(s)	361, 445, 763, 1065
SaqAI	TTAA	3 cut(s)	393, 512, 1111
SatI	GCNGC	2 cut(s)	437, 462
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	574
ScaI	AGTACT	1 cut(s)	1066
SchI	GAGTC	3 cut(s)	186, 194, 528
ScrFI	CCNGG	3 cut(s)	84, 449, 921
SduI	GDGCHC	1 cut(s)	217
SfaNI	GCATC	3 cut(s)	733, 738, 745
SinI	GGWCC	1 cut(s)	574
SmlI	CTYRAG	2 cut(s)	773, 1097
SmoI	CTYRAG	2 cut(s)	773, 1097
SpeI	ACTAGT	2 cut(s)	1061, 1088
Sse9I	AATT	3 cut(s)	310, 579, 881
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	3 cut(s)	429, 495, 819
SspMI	CTAG	5 cut(s)	345, 657, 1055, 1062, 1089
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	3 cut(s)	82, 447, 919
StyI	CCWWGG	2 cut(s)	538, 656
TaaI	ACNGT	2 cut(s)	212, 1020
TaiI	ACGT	3 cut(s)	444, 561, 851
TaqI	TCGA	3 cut(s)	243, 333, 501
TaqII	GACCGA	1 cut(s)	492
TasI	AATT	3 cut(s)	310, 579, 881
TatI	WGTACW	3 cut(s)	360, 762, 1064
TfiI	GAWTC	3 cut(s)	354, 480, 886
Tru1I	TTAA	3 cut(s)	393, 512, 1111
Tru9I	TTAA	3 cut(s)	393, 512, 1111
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	2 cut(s)	436, 461
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	1 cut(s)	393
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	618
VpaK11BI	GGWCC	1 cut(s)	574
XagI	CCTNNNNNAGG	1 cut(s)	831
XceI	RCATGY	1 cut(s)	896
XmaJI	CCTAGG	1 cut(s)	656
XspI	CTAG	5 cut(s)	345, 657, 1055, 1062, 1089
ZrmI	AGTACT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.