Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

29302045 .. 29302615

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37201.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCAAGTTCCATGTCTTTGCTGAATTTCCTTCCATAGTTTCCAAGTTGCTCATGGGGGCTGTCGAAAATGAACGCATTAAAGACATTTCTTCTAACCAAGCCAGTGCTGAAATAGATTGGGTCCAAAACAATGTCGTCACCAAAGCTGATGTCAATTTCAAATATATTACTACTGGAAATGAAATAGACGCTACAGATCCATTAGCATTATTTCTTGGCCCTGCCATGGAAAAAATTCAAAAAGCAATTTCAAAGGCTGGTCTTGCAAACAAAATCAAAGTCACCTCGACTGTTCATCCTATAATTCTTCAAGAATCCTCCGCTCCATCAAAAGGACTACCATTCAGGCCGAATTACCGATCCTTTCTTGATCCGGTCATCGGTTTCGTCGAAGGAAAGCAATCTCCGTTGCTCCATAATATTTATCCATATATACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

148

Amino Acids

16.22

Weight (kDa)

7.94

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	21 - 146	6e-26	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	326
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	3 cut(s)	194, 357, 368
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	26, 237
AfiI	CCNNNNNNNGG	3 cut(s)	229, 335, 383
AgsI	TTSAA	4 cut(s)	163, 242, 255, 314
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AlwI	GGATC	3 cut(s)	194, 357, 368
AoxI	GGCC	3 cut(s)	3, 220, 350
ApoI	RAATTY	2 cut(s)	26, 237
ArsI	GACNNNNNNTTYG	4 cut(s)	138, 170, 267, 299
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	124, 221
AsuHPI	GGTGA	2 cut(s)	133, 277
AvaII	GGWCC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 221
BmiI	GGNNCC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 335, 383
Bse1I	ACTGG	2 cut(s)	105, 181
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	229, 335, 383
BseNI	ACTGG	2 cut(s)	105, 181
BshFI	GGCC	3 cut(s)	5, 222, 352
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	229, 335, 383
BsnI	GGCC	3 cut(s)	5, 222, 352
Bsp143I	GATC	3 cut(s)	199, 362, 373
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	3 cut(s)	5, 222, 352
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	3 cut(s)	194, 357, 368
BsrBI	CCGCTC	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	105, 181
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	199, 362, 373
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	295
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	202, 365, 376
BstMBI	GATC	3 cut(s)	199, 362, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	5, 222, 352
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	124, 221
CseI	GACGC	1 cut(s)	200
CviAII	CATG	3 cut(s)	14, 55, 229
CviJI	RGCY	7 cut(s)	5, 62, 104, 149, 222, 260, 352
CviKI_1	RGCY	7 cut(s)	5, 62, 104, 149, 222, 260, 352
DpnI	GATC	3 cut(s)	201, 364, 375
DpnII	GATC	3 cut(s)	199, 362, 373
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	17, 58, 232
FatI	CATG	3 cut(s)	13, 54, 228
FokI	GGATG	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	5, 222, 352
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	17, 58, 232
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	133, 277
Hpy188III	TCNNGA	2 cut(s)	314, 371
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	42, 389
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	17, 58, 232
Kzo9I	GATC	3 cut(s)	199, 362, 373
LmnI	GCTCC	2 cut(s)	331, 420
LpnPI	CCDG	6 cut(s)	118, 162, 237, 246, 334, 390
MaeIII	GTNAC	2 cut(s)	139, 283
MalI	GATC	3 cut(s)	201, 364, 375
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	3 cut(s)	199, 362, 373
MboII	GAAGA	2 cut(s)	84, 302
MflI	RGATCY	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	26, 157, 237, 249, 306, 355
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	298, 331
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	199, 362, 373
NlaIII	CATG	3 cut(s)	17, 58, 232
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	139, 283
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	2 cut(s)	124, 221
PsuI	RGATCY	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	199, 362, 373
Sau96I	GGNCC	2 cut(s)	124, 221
SetI	ASST	2 cut(s)	151, 290
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	124
Sse9I	AATT	6 cut(s)	26, 157, 237, 249, 306, 355
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	66, 290, 393
TasI	AATT	6 cut(s)	26, 157, 237, 249, 306, 355
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	139, 283
Tsp45I	GTSAC	2 cut(s)	139, 283
TspDTI	ATGAA	3 cut(s)	87, 198, 287
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	26, 237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.