Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000730.1

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

155047 .. 156400

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000730.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ctggagcacatcggtgtaggcggcgaagttggtcggggagtggcagaggttctcgatctggtcgatgaaggcgaaggaggtgaagttctcggaggcgatgagctcgatgtcacggcagtggcgacgcttctccttctcgatcaggtcgtggatctatggatccatggtctccagattgtttcgggctcggtctcggttttaccaaatttcaggcccgacccgacccgagcccagccctacaatataacatcaaaaagatgcggctctataatcccaaccacgaggcgctccaaacccagtggctccaacattgaggtgatgctaggagtggagaatgagcttattcaaaatgtttcctctaagagagtcttgcgtatgtcaaccgtaccaagtggcagtgcggctgaccaatcagtgcccagcatgggtcaagccattgcagatgattgggtccaaagaaatgttggaaactataaggatgtgaacttcaaatacattgcagttggaaatgaaatagacctcaaagatccaatggcaccatatattggccttgccatagaaaagttcatgctgcaatttctaaggttggccttgcaaataactgtggtttaccctataatcctccaagagtcctaccctccttcaagaggcgcattcaagcctgagtggagaccatttctagatcctatcattgacgtcttaaaggcgagcaaatcccccttattcctcaatatgtaccatgattttatgctcctgcaagatggccatcttcagtatcgaaacttgttcgatgtagatctggatgcacattacgctgctttagagagagtcgggggaggttctatgaaaactattatgttggagataggttggccatcagtgggtggggatagcaaaatgacaagcaaggagaatgccagaattttcaactcgaatttgatcaagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

316

Amino Acids

34.76

Weight (kDa)

5.21

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	699
AccB1I	GGYRCC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	545
AciI	CCGC	3 cut(s)	21, 261, 401
AclWI	GGATC	5 cut(s)	154, 159, 167, 521, 677
AcoI	YGGCCR	2 cut(s)	763, 872
AcsI	RAATTY	3 cut(s)	205, 921, 934
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	696
AfaI	GTAC	2 cut(s)	387, 737
AfiI	CCNNNNNNNGG	4 cut(s)	425, 545, 647, 881
AgsI	TTSAA	5 cut(s)	347, 490, 645, 658, 928
AleI	CACNNNNGTG	2 cut(s)	12, 116
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	2 cut(s)	103, 340
AluI	AGCT	2 cut(s)	103, 340
Alw21I	GWGCWC	2 cut(s)	9, 105
Alw26I	GTCTC	3 cut(s)	173, 196, 664
AlwI	GGATC	5 cut(s)	154, 159, 167, 521, 677
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	5 cut(s)	212, 547, 588, 763, 872
ApeKI	GCWGC	2 cut(s)	571, 815
ApoI	RAATTY	3 cut(s)	205, 921, 934
AspLEI	GCGC	2 cut(s)	288, 653
AspS9I	GGNCC	2 cut(s)	213, 451
AsuHPI	GGTGA	2 cut(s)	92, 328
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	2 cut(s)	765, 874
BamHI	GGATCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	535
BanII	GRGCYC	3 cut(s)	105, 188, 232
BauI	CACGAG	1 cut(s)	280
Bbv12I	GWGCWC	2 cut(s)	9, 105
BbvI	GCAGC	2 cut(s)	558, 802
BccI	CCATC	3 cut(s)	755, 774, 883
BceAI	ACGGC	1 cut(s)	129
BclI	TGATCA	1 cut(s)	939
BcoDI	GTCTC	3 cut(s)	173, 196, 664
BfaI	CTAG	2 cut(s)	323, 680
BfoI	RGCGCY	1 cut(s)	289
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	5 cut(s)	22, 262, 402, 572, 816
BlsI	GCNGC	5 cut(s)	23, 263, 403, 573, 817
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	213, 451
BmiI	GGNNCC	4 cut(s)	161, 304, 452, 537
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	248, 309, 793
BmuI	ACTGGG	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	23, 155
BsaBI	GATNNNNATC	2 cut(s)	765, 795
BsaHI	GRCGYC	1 cut(s)	696
BsaI	GGTCTC	3 cut(s)	173, 196, 664
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	4 cut(s)	425, 545, 647, 881
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	435, 495
Bse8I	GATNNNNATC	2 cut(s)	765, 795
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	2 cut(s)	484, 808
BseJI	GATNNNNATC	2 cut(s)	765, 795
BseLI	CCNNNNNNNGG	4 cut(s)	425, 545, 647, 881
BseMI	GCAATG	2 cut(s)	435, 495
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	2 cut(s)	558, 802
BseYI	CCCAGC	2 cut(s)	231, 419
BshFI	GGCC	5 cut(s)	214, 549, 590, 765, 874
BshNI	GGYRCC	1 cut(s)	535
BsiHKAI	GWGCWC	2 cut(s)	9, 105
BsiHKCI	CYCGRG	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	425, 545, 647, 881
BsmAI	GTCTC	3 cut(s)	173, 196, 664
BsmI	GAATGC	2 cut(s)	653, 919
BsnI	GGCC	5 cut(s)	214, 549, 590, 765, 874
Bso31I	GGTCTC	3 cut(s)	173, 196, 664
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	5 cut(s)	9, 105, 188, 232, 420
Bsp143I	GATC	8 cut(s)	55, 139, 151, 159, 526, 682, 796, 939
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	3 cut(s)	21, 261, 401
BspANI	GGCC	5 cut(s)	214, 549, 590, 765, 874
BspCNI	CTCAG	1 cut(s)	655
BspLI	GGNNCC	4 cut(s)	161, 304, 452, 537
BspPI	GGATC	5 cut(s)	154, 159, 167, 521, 677
BspT107I	GGYRCC	1 cut(s)	535
BspTNI	GGTCTC	3 cut(s)	173, 196, 664
BsrDI	GCAATG	2 cut(s)	435, 495
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	8 cut(s)	55, 139, 151, 159, 526, 682, 796, 939
BssNI	GRCGYC	1 cut(s)	696
BssSI	CACGAG	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	385, 604
BstACI	GRCGYC	1 cut(s)	696
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	3 cut(s)	360, 581, 663
BstDSI	CCRYGG	1 cut(s)	163
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	484, 808
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	2 cut(s)	288, 653
BstKTI	GATC	8 cut(s)	58, 142, 154, 162, 529, 685, 799, 942
BstMAI	GTCTC	3 cut(s)	173, 196, 664
BstMBI	GATC	8 cut(s)	55, 139, 151, 159, 526, 682, 796, 939
BstMWI	GCNNNNNNNGC	1 cut(s)	812
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	558, 802
BstX2I	RGATCY	5 cut(s)	151, 159, 526, 682, 796
BstYI	RGATCY	5 cut(s)	151, 159, 526, 682, 796
BsuRI	GGCC	5 cut(s)	214, 549, 590, 765, 874
BtgI	CCRYGG	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	484, 808
BtsI	GCAGTG	2 cut(s)	123, 403
BtsIMutI	CAGTG	5 cut(s)	123, 304, 403, 420, 885
Cac8I	GCNNGC	1 cut(s)	709
CfoI	GCGC	2 cut(s)	288, 653
Cfr13I	GGNCC	2 cut(s)	213, 451
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	386, 736
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	4 cut(s)	164, 424, 568, 740
CviQI	GTAC	2 cut(s)	386, 736
DdeI	CTNAG	3 cut(s)	360, 581, 663
DpnI	GATC	8 cut(s)	57, 141, 153, 161, 528, 684, 798, 941
DpnII	GATC	8 cut(s)	55, 139, 151, 159, 526, 682, 796, 939
EaeI	YGGCCR	2 cut(s)	763, 872
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	3 cut(s)	105, 188, 232
Eco31I	GGTCTC	3 cut(s)	173, 196, 664
Eco47I	GGWCC	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	3 cut(s)	105, 188, 232
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	4 cut(s)	167, 427, 571, 743
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	4 cut(s)	163, 423, 567, 739
FbaI	TGATCA	1 cut(s)	939
Fnu4HI	GCNGC	5 cut(s)	22, 262, 402, 572, 816
FokI	GGATG	2 cut(s)	491, 815
FriOI	GRGCYC	3 cut(s)	105, 188, 232
Fsp4HI	GCNGC	5 cut(s)	22, 262, 402, 572, 816
FspBI	CTAG	2 cut(s)	323, 680
GlaI	GCGC	2 cut(s)	287, 652
GluI	GCNGC	5 cut(s)	22, 262, 402, 572, 816
GsaI	CCCAGC	2 cut(s)	235, 423
GsuI	CTGGAG	2 cut(s)	23, 155
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	5 cut(s)	214, 549, 590, 765, 874
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	288, 653
Hin1I	GRCGYC	1 cut(s)	696
Hin1II	CATG	4 cut(s)	167, 427, 571, 743
Hin6I	GCGC	2 cut(s)	286, 651
HinP1I	GCGC	2 cut(s)	286, 651
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	3 cut(s)	366, 629, 828
HphI	GGTGA	2 cut(s)	92, 328
Hpy166II	GTNNAC	3 cut(s)	381, 484, 610
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	6 cut(s)	53, 137, 172, 645, 680, 800
Hpy8I	GTNNAC	3 cut(s)	381, 484, 610
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	62, 68, 143, 651
HpyCH4III	ACNGT	2 cut(s)	385, 604
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	6 cut(s)	440, 500, 574, 595, 757, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	812
HpyF3I	CTNAG	3 cut(s)	360, 581, 663
HpySE526I	ACGT	1 cut(s)	696
Hsp92I	GRCGYC	1 cut(s)	696
Hsp92II	CATG	4 cut(s)	167, 427, 571, 743
HspAI	GCGC	2 cut(s)	286, 651
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	8 cut(s)	55, 139, 151, 159, 526, 682, 796, 939
LmnI	GCTCC	4 cut(s)	4, 293, 308, 756
Lsp1109I	GCAGC	2 cut(s)	558, 802
LweI	GCATC	3 cut(s)	248, 309, 793
MaeI	CTAG	2 cut(s)	323, 680
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	8 cut(s)	57, 141, 153, 161, 528, 684, 798, 941
MboI	GATC	8 cut(s)	55, 139, 151, 159, 526, 682, 796, 939
MboII	GAAGA	1 cut(s)	761
MflI	RGATCY	5 cut(s)	151, 159, 526, 682, 796
MhlI	GDGCHC	5 cut(s)	9, 105, 188, 232, 420
MlsI	TGGCCA	2 cut(s)	765, 874
MluCI	AATT	4 cut(s)	205, 575, 921, 934
MluNI	TGGCCA	2 cut(s)	765, 874
MlyI	GAGTC	3 cut(s)	375, 638, 837
MmeI	TCCRAC	4 cut(s)	330, 445, 484, 840
Mox20I	TGGCCA	2 cut(s)	765, 874
MscI	TGGCCA	2 cut(s)	765, 874
MseI	TTAA	1 cut(s)	701
MslI	CAYNNNNRTG	3 cut(s)	12, 116, 314
Msp20I	TGGCCA	2 cut(s)	765, 874
Mva1269I	GAATGC	2 cut(s)	653, 919
MwoI	GCNNNNNNNGC	1 cut(s)	812
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	8 cut(s)	55, 139, 151, 159, 526, 682, 796, 939
NlaIII	CATG	4 cut(s)	167, 427, 571, 743
NlaIV	GGNNCC	4 cut(s)	161, 304, 452, 537
NmuCI	GTSAC	1 cut(s)	109
OliI	CACNNNNGTG	2 cut(s)	12, 116
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 69, 119, 144
PctI	GAATGC	2 cut(s)	653, 919
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	23, 263, 403, 573, 817
PleI	GAGTC	3 cut(s)	374, 637, 836
PpsI	GAGTC	3 cut(s)	374, 637, 836
Psp124BI	GAGCTC	1 cut(s)	105
PspFI	CCCAGC	2 cut(s)	231, 419
PspN4I	GGNNCC	4 cut(s)	161, 304, 452, 537
PspPI	GGNCC	2 cut(s)	213, 451
PsrI	GAACNNNNNNTAC	2 cut(s)	476, 508
PsuI	RGATCY	5 cut(s)	151, 159, 526, 682, 796
RsaI	GTAC	2 cut(s)	387, 737
RsaNI	GTAC	2 cut(s)	386, 736
RseI	CAYNNNNRTG	3 cut(s)	12, 116, 314
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	701
SatI	GCNGC	5 cut(s)	22, 262, 402, 572, 816
Sau3AI	GATC	8 cut(s)	55, 139, 151, 159, 526, 682, 796, 939
Sau96I	GGNCC	2 cut(s)	213, 451
SchI	GAGTC	3 cut(s)	375, 638, 837
SduI	GDGCHC	5 cut(s)	9, 105, 188, 232, 420
SfaNI	GCATC	3 cut(s)	248, 309, 793
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	3 cut(s)	12, 116, 314
Sse9I	AATT	4 cut(s)	205, 575, 921, 934
SsiI	CCGC	3 cut(s)	21, 261, 401
SspMI	CTAG	2 cut(s)	323, 680
SstI	GAGCTC	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	385, 604
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	7 cut(s)	54, 63, 105, 138, 778, 789, 932
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	4 cut(s)	205, 575, 921, 934
TauI	GCSGC	3 cut(s)	24, 264, 404
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TscAI	CASTG	5 cut(s)	123, 304, 403, 420, 885
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	571, 815
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	81, 525, 556, 860
TspRI	CASTG	5 cut(s)	123, 304, 403, 420, 885
Van91I	CCANNNNNTGG	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	451
XagI	CCTNNNNNAGG	1 cut(s)	645
XapI	RAATTY	3 cut(s)	205, 921, 934
XbaI	TCTAGA	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	2 cut(s)	323, 680
ZraI	GACGTC	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.