Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

28693248 .. 28695122

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCCAAGTCCCATGTGGTTGCAGTTTCCAAGTTACTACTTTTTGGGATCCTAATGGCGACCTTTACCACAACAGGTGCCCAAATTGGTGTTTGTTATGGAACTCTAGCAAACAATCTACCAGAACCACGACAAGTAATATCACTTTACAACCAACATAACATCAAAAGGATGCGGCTATATGGTCCTAACCATGACGCTCTCGAAGCTCTTAGAGGCTCCAACATCGAGCTCATGCTTGGGGTCGAACACGAACGCCTTCAGGACATATCTTCCAACCAAGCCAGTGCTGATGATTGGGTCCAAAACAATGTGGTAACCTATGGAGATGTCAATTTCAAATACATTGCAGTTGGGAATGAAATAGAATCAGGTCCATTTGCACAATTTGTTGGCCCTGCCATGGAAAGAATTCAAAATGCAATTTCTAAGGCCGGTCTTGCAAACAAAATTAAAGTCTCGACAGCGGTTCATCCTATAGTCCTCCAAGAATCCTTCCCTCCATCAAAAGGATCATTCAAGCAGGATTATCGAGCCTTTCTTGATCCTGTCATTGGTTTCCTTGTGGGAAACCAATCTCCGTTGCTTGTTAATATGTACCCATACTTTAGTTACATTGACAACCGAGAGATTAACCTTCAATATGCTCTTTTCACATCTCCATCAGTTCAGGTTCAAGATGGACAACTTGGCTACCAAAACTTGTTTGATGCACTTCTGGATGCACATTACTCCGCTTTAGAGAAGGCCGGAGGCGGTTCTTTGAAAATTGTTGTATCGGAGACGGGTTGGCCTTCCGCTGGTGGTGATGGCGAAGTGACAACAATAGAGAATGCGAGAATCTACAACTCACATGTGATTAATCATGTCAAGGGTGGTACTCCGAAGAAACCTGAAGGTCCTATAGAAACTTACATATTTGCCATGTTCAATGAGAATGAGAAAACTGGAGCAGAGACTGAGAAGAATTTCGGGCTCTTTTTACCAACCGGAGATCCTGCTTATCCTATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

340

Amino Acids

37.27

Weight (kDa)

5.51

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 339	1.9e-106	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	5 cut(s)	175, 467, 735, 756, 798
AclWI	GGATC	5 cut(s)	43, 56, 520, 539, 989
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	411, 967
AcuI	CTGAAG	2 cut(s)	245, 915
AfaI	GTAC	2 cut(s)	599, 880
AfiI	CCNNNNNNNGG	4 cut(s)	403, 509, 554, 800
AflIII	ACRYGT	1 cut(s)	853
AgsI	TTSAA	8 cut(s)	340, 416, 520, 641, 677, 766, 931, 1018
AluBI	AGCT	2 cut(s)	209, 232
AluI	AGCT	2 cut(s)	209, 232
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	3 cut(s)	463, 776, 950
AlwI	GGATC	5 cut(s)	43, 56, 520, 539, 989
AlwNI	CAGNNNCTG	1 cut(s)	959
AoxI	GGCC	5 cut(s)	3, 394, 432, 747, 791
ApoI	RAATTY	2 cut(s)	411, 967
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AseI	ATTAAT	1 cut(s)	861
Asp700I	GAANNNNTTC	3 cut(s)	258, 411, 968
AspS9I	GGNCC	5 cut(s)	185, 301, 374, 395, 899
AsuHPI	GGTGA	1 cut(s)	818
AvaII	GGWCC	4 cut(s)	185, 301, 374, 899
BaeGI	GKGCMC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	234, 978
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	4 cut(s)	511, 670, 674, 803
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BcoDI	GTCTC	3 cut(s)	463, 776, 950
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	2 cut(s)	477, 903
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme18I	GGWCC	4 cut(s)	185, 301, 374, 899
BmgT120I	GGNCC	5 cut(s)	185, 301, 374, 395, 899
BmiI	GGNNCC	4 cut(s)	50, 79, 220, 302
BmsI	GCATC	3 cut(s)	162, 700, 712
BpmI	CTGGAG	1 cut(s)	969
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	989
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 509, 554, 800
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	285, 952
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	3 cut(s)	177, 472, 727
BseLI	CCNNNNNNNGG	4 cut(s)	403, 509, 554, 800
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	951
BseNI	ACTGG	2 cut(s)	285, 952
BseSI	GKGCMC	1 cut(s)	82
BshFI	GGCC	5 cut(s)	5, 396, 434, 749, 793
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	435, 750, 990
BslI	CCNNNNNNNGG	4 cut(s)	403, 509, 554, 800
BsmAI	GTCTC	3 cut(s)	463, 776, 950
BsmBI	CGTCTC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	5 cut(s)	5, 396, 434, 749, 793
Bsp1286I	GDGCHC	3 cut(s)	82, 234, 978
Bsp143I	GATC	4 cut(s)	48, 512, 544, 994
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	5 cut(s)	175, 467, 735, 756, 798
BspANI	GGCC	5 cut(s)	5, 396, 434, 749, 793
BspCNI	CTCAG	1 cut(s)	952
BspLI	GGNNCC	4 cut(s)	50, 79, 220, 302
BspPI	GGATC	5 cut(s)	43, 56, 520, 539, 989
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	285, 952
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	4 cut(s)	48, 512, 544, 994
BssT1I	CCWWGG	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	212, 429, 960
BstDSI	CCRYGG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	316
BstF5I	GGATG	3 cut(s)	177, 472, 727
BstKTI	GATC	4 cut(s)	51, 515, 547, 997
BstMAI	GTCTC	3 cut(s)	463, 776, 950
BstMBI	GATC	4 cut(s)	48, 512, 544, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 440
BstNSI	RCATGY	1 cut(s)	857
BstPI	GGTNACC	1 cut(s)	316
BstSFI	CTRYAG	2 cut(s)	477, 903
BstSLI	GKGCMC	1 cut(s)	82
BstX2I	RGATCY	2 cut(s)	48, 994
BstYI	RGATCY	2 cut(s)	48, 994
BsuRI	GGCC	5 cut(s)	5, 396, 434, 749, 793
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	177, 472, 727
BtsIMutI	CAGTG	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	959
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	5 cut(s)	185, 301, 374, 395, 899
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	598, 879
CviAII	CATG	7 cut(s)	14, 194, 235, 403, 854, 866, 925
CviQI	GTAC	2 cut(s)	598, 879
DdeI	CTNAG	3 cut(s)	212, 429, 960
DpnI	GATC	4 cut(s)	50, 514, 546, 996
DpnII	GATC	4 cut(s)	48, 512, 544, 994
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	2 cut(s)	234, 978
Eco47I	GGWCC	4 cut(s)	185, 301, 374, 899
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	245, 915
Eco91I	GGTNACC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	899
EcoO65I	GGTNACC	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	2 cut(s)	234, 978
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	776
FaeI	CATG	7 cut(s)	17, 197, 238, 406, 857, 869, 928
FatI	CATG	7 cut(s)	13, 193, 234, 402, 853, 865, 924
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	3 cut(s)	184, 459, 734
FriOI	GRGCYC	2 cut(s)	234, 978
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	969
HaeIII	GGCC	5 cut(s)	5, 396, 434, 749, 793
HapII	CCGG	3 cut(s)	435, 750, 990
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	7 cut(s)	17, 197, 238, 406, 857, 869, 928
HinfI	GANTC	3 cut(s)	368, 491, 840
HpaII	CCGG	3 cut(s)	435, 750, 990
HphI	GGTGA	1 cut(s)	818
Hpy188I	TCNGA	2 cut(s)	781, 885
Hpy188III	TCNNGA	6 cut(s)	203, 263, 460, 542, 677, 719
HpyAV	CCTTC	6 cut(s)	269, 505, 647, 739, 804, 890
HpyCH4V	TGCA	7 cut(s)	23, 350, 383, 422, 443, 713, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 440
HpyF3I	CTNAG	3 cut(s)	212, 429, 960
Hsp92II	CATG	7 cut(s)	17, 197, 238, 406, 857, 869, 928
Kzo9I	GATC	4 cut(s)	48, 512, 544, 994
LmnI	GCTCC	2 cut(s)	224, 950
LweI	GCATC	3 cut(s)	162, 700, 712
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	4 cut(s)	33, 316, 611, 817
MalI	GATC	4 cut(s)	50, 514, 546, 996
MboI	GATC	4 cut(s)	48, 512, 544, 994
MboII	GAAGA	3 cut(s)	264, 898, 976
MflI	RGATCY	2 cut(s)	48, 994
MhlI	GDGCHC	3 cut(s)	82, 234, 978
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	84, 334, 386, 411, 423, 450, 768, 967, 1012
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	246, 300
MnlI	CCTC	4 cut(s)	209, 494, 510, 746
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	258, 411, 968
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	453, 591, 633, 861
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	467, 800
MspI	CCGG	3 cut(s)	435, 750, 990
Mva1269I	GAATGC	1 cut(s)	838
MwoI	GCNNNNNNNGC	2 cut(s)	206, 440
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	48, 512, 544, 994
NlaIII	CATG	7 cut(s)	17, 197, 238, 406, 857, 869, 928
NlaIV	GGNNCC	4 cut(s)	50, 79, 220, 302
NmuCI	GTSAC	1 cut(s)	817
NspI	RCATGY	1 cut(s)	857
PciI	ACATGT	1 cut(s)	853
PctI	GAATGC	1 cut(s)	838
PdmI	GAANNNNTTC	3 cut(s)	258, 411, 968
PfeI	GAWTC	3 cut(s)	368, 491, 840
PkrI	GCNGC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	899
PscI	ACATGT	1 cut(s)	853
PshBI	ATTAAT	1 cut(s)	861
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	899
PspEI	GGTNACC	1 cut(s)	316
PspN4I	GGNNCC	4 cut(s)	50, 79, 220, 302
PspPI	GGNCC	5 cut(s)	185, 301, 374, 395, 899
PspPPI	RGGWCCY	1 cut(s)	899
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	48, 994
RsaI	GTAC	2 cut(s)	599, 880
RsaNI	GTAC	2 cut(s)	598, 879
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	4 cut(s)	453, 591, 633, 861
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	4 cut(s)	48, 512, 544, 994
Sau96I	GGNCC	5 cut(s)	185, 301, 374, 395, 899
SduI	GDGCHC	3 cut(s)	82, 234, 978
SfaNI	GCATC	3 cut(s)	162, 700, 712
SfcI	CTRYAG	2 cut(s)	477, 903
SinI	GGWCC	4 cut(s)	185, 301, 374, 899
Sse9I	AATT	9 cut(s)	84, 334, 386, 411, 423, 450, 768, 967, 1012
SsiI	CCGC	5 cut(s)	175, 467, 735, 756, 798
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	402
TaqI	TCGA	5 cut(s)	204, 228, 246, 461, 532
TasI	AATT	9 cut(s)	84, 334, 386, 411, 423, 450, 768, 967, 1012
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	3 cut(s)	368, 491, 840
Tru1I	TTAA	4 cut(s)	453, 591, 633, 861
Tru9I	TTAA	4 cut(s)	453, 591, 633, 861
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	817
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	2 cut(s)	375, 461
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	4 cut(s)	185, 301, 374, 899
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	2 cut(s)	411, 967
XceI	RCATGY	1 cut(s)	857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmnI	GAANNNNTTC	3 cut(s)	258, 411, 968
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.