Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007855.1

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

40232 .. 41088

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007855.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggtgcaggtgccaagatgggtgtctgttatgcatggtatggtggcaaacaatttaccacccccacgagaagtaatatctctttacaaccaacataacatcgaaaggatacggctatatggtcctgaccatgacgccctcgaagctcttagaggctccaacattgagctcatgcttgatgctaaaggtccgttagcaccatttgttggccctgccacggaaaagattcacaatgcaatctcaaaggctgatcttgcaaacaaaattaaagtctccactgccgttcaacctgtaattctccaggaatcctaccctccatcaaaaggatcattcaggcaggattatcgaccatttcttgatcctatcattggtttcctagtgggaaacaaatctccattgcttctaaatatttacccatactttaagaaggccggggacagttctttgacaattgttgtatcagagactggttggccctccgctggtggtgatggccaagtgacaacaaaggagaatgcgagaatttacaactcaaatgtggtcaagcatgtcaagcgtggtactccgaagaagcctgagttcccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

195

Amino Acids

21.51

Weight (kDa)

9.49

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	206
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	2 cut(s)	334, 353
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	5 cut(s)	206, 217, 323, 368, 482
AgsI	TTSAA	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	146, 169
AluI	AGCT	2 cut(s)	146, 169
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	277, 458
AlwI	GGATC	2 cut(s)	334, 353
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	4 cut(s)	208, 429, 473, 493
ApoI	RAATTY	1 cut(s)	522
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	4 cut(s)	122, 188, 209, 474
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	122, 188
BalI	TGGCCA	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	171
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	3 cut(s)	12, 325, 485
BceAI	ACGGC	2 cut(s)	128, 266
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	277, 458
BfaI	CTAG	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	302, 433
Bme18I	GGWCC	2 cut(s)	122, 188
BmgT120I	GGNCC	4 cut(s)	122, 188, 209, 474
BmiI	GGNNCC	2 cut(s)	12, 157
BmrFI	CCNGG	2 cut(s)	302, 433
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	216, 432
Bsc4I	CCNNNNNNNGG	5 cut(s)	206, 217, 323, 368, 482
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	216, 432
BseLI	CCNNNNNNNGG	5 cut(s)	206, 217, 323, 368, 482
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	472
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	210, 431, 475, 495
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	5 cut(s)	206, 217, 323, 368, 482
BsmAI	GTCTC	2 cut(s)	277, 458
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	4 cut(s)	210, 431, 475, 495
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	250, 326, 358
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	4 cut(s)	210, 431, 475, 495
BspCNI	CTCAG	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	12, 157
BspPI	GGATC	2 cut(s)	334, 353
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	216, 432
BssMI	GATC	3 cut(s)	250, 326, 358
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	440
BstACI	GRCGYC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	149, 576
BstDSI	CCRYGG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	253, 329, 361
BstMAI	GTCTC	2 cut(s)	277, 458
BstMBI	GATC	3 cut(s)	250, 326, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 254, 553
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	2 cut(s)	300, 431
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	210, 431, 475, 495
BtgI	CCRYGG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr13I	GGNCC	4 cut(s)	122, 188, 209, 474
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	4 cut(s)	35, 131, 172, 548
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	149, 576
DpnI	GATC	3 cut(s)	252, 328, 360
DpnII	GATC	3 cut(s)	250, 326, 358
EaeI	YGGCCR	1 cut(s)	493
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	122, 188
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	4 cut(s)	38, 134, 175, 551
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	4 cut(s)	34, 130, 171, 547
FriOI	GRGCYC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	4 cut(s)	210, 431, 475, 495
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	38, 134, 175, 551
HinfI	GANTC	2 cut(s)	226, 305
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	463, 567
Hpy188III	TCNNGA	2 cut(s)	125, 356
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	4 cut(s)	7, 34, 236, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 254, 553
HpyF3I	CTNAG	2 cut(s)	149, 576
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	38, 134, 175, 551
Kzo9I	GATC	3 cut(s)	250, 326, 358
LmnI	GCTCC	1 cut(s)	161
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	3 cut(s)	252, 328, 360
MboI	GATC	3 cut(s)	250, 326, 358
MboII	GAAGA	1 cut(s)	580
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	5 cut(s)	52, 264, 294, 450, 522
MluNI	TGGCCA	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	4 cut(s)	146, 149, 324, 487
Mox20I	TGGCCA	1 cut(s)	495
Mph1103I	ATGCAT	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	2 cut(s)	267, 423
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	2 cut(s)	302, 433
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	143, 254, 553
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	3 cut(s)	250, 326, 358
NlaIII	CATG	4 cut(s)	38, 134, 175, 551
NlaIV	GGNNCC	2 cut(s)	12, 157
NmuCI	GTSAC	1 cut(s)	499
NsiI	ATGCAT	1 cut(s)	36
NspI	RCATGY	1 cut(s)	551
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	226, 305
PflMI	CCANNNNNTGG	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	12, 157
PspPI	GGNCC	4 cut(s)	122, 188, 209, 474
PstNI	CAGNNNCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	267, 423
Sau3AI	GATC	3 cut(s)	250, 326, 358
Sau96I	GGNCC	4 cut(s)	122, 188, 209, 474
ScrFI	CCNGG	2 cut(s)	302, 433
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	12, 148, 171, 190, 292
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	122, 188
Sse9I	AATT	5 cut(s)	52, 264, 294, 450, 522
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	300, 431
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	3 cut(s)	102, 141, 346
TasI	AATT	5 cut(s)	52, 264, 294, 450, 522
TfiI	GAWTC	2 cut(s)	226, 305
Tru1I	TTAA	2 cut(s)	267, 423
Tru9I	TTAA	2 cut(s)	267, 423
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspGWI	ACGGA	2 cut(s)	180, 233
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	122, 188
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.