Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

8958406 .. 8960437

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCCAAGACACATTTAGCTGGCAAAAGCCCTTCCATTGTTTCCATAATGCCACTTTTTGGGCTGCTAATGGCTAGCCTTACCACAACTGGAGCAAATATTGGTGTTTGTTATGGAACACTTGGAGACAACTTACCTTCCGCACAAGAAGTAATCTCTATGTACAACCAATATAGCATCCAAAAAATGAGGCTCTATGATCCTAACCCACAGGCTCTTCAAGCCCTTAGAGGCTCCAATATTGAGCTCATGCTCGATGTACCCAACGAAGGCCTTAAAGACATCTCTTCTAGCCAAGCCAGTGCAGATTCTTGGATCCAAAGTAATGTCATAACCTACGGAAATGACAATTTCAAATACATCGTGGTTGGGAACGAAATAGATCCCACAGGTCCATTAGCCCCGTTTGTTGCCTCTGCAATGGAAAATATTCAAAAAGCAGTTTCTGCCGCCGGTCTTGCAACCCAAATTAAAGTCTCCACCGCGGTTTACACCGCGATTCTCAACGAATCCTACCCGCCATCAAAAGCCTTCTTCAACCCTGAATATCGACAGTTTCTTGATGCTATCATTGCTTTTTTGGTGGCCAATCAATCTCCATTTCTGGTTAATGTGTACCCATATTTTAGTTATGTTCAAAATCGTCAGACTATGGGTATGGACTATGCACTTTTTACATCTCCGTCAGTTGTGGTACAGGATGGTCAGCTTGGGTATCAAAATCTGTTTGATGCAATTTTGGATGCAGTTTATGAAGCATTAGAGAAAGCCGGAGGCGGTTCTTTGAAACTTGTCGTATCGGAAAGTGGTTGGCCCTCGGCGGGTGGCGATGGCGAAGTGACCACAAAAGAGAATGCGAGAACTTACAACTCAAATTTGGTTAAGCATGTGAAGGGCGGGACTCCGAAGAGACCTGAAAGCCCTGTAGAGACTTATATCTTTGCCATGTTTAATGAGGATCAAAAAACAGGGCCGGCGATTGAGAAACACTGGGGACTCTTTTTCCCCGACAAAACTCCGAAATATTCCATTGATTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

348

Amino Acids

37.8

Weight (kDa)

4.99

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	2 cut(s)	485, 497
AciI	CCGC	9 cut(s)	141, 450, 483, 485, 495, 518, 777, 821, 897
AclWI	GGATC	5 cut(s)	194, 310, 323, 377, 966
AcoI	YGGCCR	2 cut(s)	3, 585
AcsI	RAATTY	1 cut(s)	874
AfaI	GTAC	4 cut(s)	164, 261, 617, 696
AfiI	CCNNNNNNNGG	3 cut(s)	59, 269, 821
AgsI	TTSAA	7 cut(s)	221, 355, 434, 538, 638, 787, 1039
AluBI	AGCT	3 cut(s)	20, 247, 709
AluI	AGCT	3 cut(s)	20, 247, 709
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	4 cut(s)	120, 481, 904, 923
AlwI	GGATC	5 cut(s)	194, 310, 323, 377, 966
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	5 cut(s)	3, 271, 585, 812, 971
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	874
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	3 cut(s)	392, 813, 971
AsuNHI	GCTAGC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	392
BalI	TGGCCA	2 cut(s)	5, 587
BamHI	GGATCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	3 cut(s)	529, 695, 824
BcoDI	GTCTC	4 cut(s)	120, 481, 904, 923
BfaI	CTAG	2 cut(s)	75, 291
BfmI	CTRYAG	1 cut(s)	924
BisI	GCNGC	2 cut(s)	65, 450
BlsI	GCNGC	2 cut(s)	66, 451
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	392, 813, 971
BmiI	GGNNCC	2 cut(s)	235, 317
BmrI	ACTGGG	1 cut(s)	1000
BmsI	GCATC	4 cut(s)	186, 553, 721, 733
BmtI	GCTAGC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	1000
BpmI	CTGGAG	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	2 cut(s)	483, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 269, 821
Bse118I	RCCGGY	2 cut(s)	452, 973
Bse1I	ACTGG	3 cut(s)	94, 300, 995
Bse3DI	GCAATG	2 cut(s)	426, 570
BseDI	CCNNGG	2 cut(s)	483, 816
BseGI	GGATG	3 cut(s)	177, 706, 748
BseLI	CCNNNNNNNGG	3 cut(s)	59, 269, 821
BseMI	GCAATG	2 cut(s)	426, 570
BseNI	ACTGG	3 cut(s)	94, 300, 995
BseXI	GCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	2 cut(s)	485, 497
BshFI	GGCC	5 cut(s)	5, 273, 587, 814, 973
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	453, 771, 974
BslFI	GGGAC	2 cut(s)	913, 1008
BslI	CCNNNNNNNGG	3 cut(s)	59, 269, 821
BsmAI	GTCTC	4 cut(s)	120, 481, 904, 923
BsmFI	GGGAC	2 cut(s)	913, 1008
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	5 cut(s)	5, 273, 587, 814, 973
Bso31I	GGTCTC	1 cut(s)	904
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	199, 315, 382, 958
BspACI	CCGC	9 cut(s)	141, 450, 483, 485, 495, 518, 777, 821, 897
BspANI	GGCC	5 cut(s)	5, 273, 587, 814, 973
BspFNI	CGCG	2 cut(s)	485, 497
BspLI	GGNNCC	2 cut(s)	235, 317
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	5 cut(s)	194, 310, 323, 377, 966
BspQI	GCTCTTC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	904
BsrDI	GCAATG	2 cut(s)	426, 570
BsrFI	RCCGGY	2 cut(s)	452, 973
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	94, 300, 995
BssAI	RCCGGY	2 cut(s)	452, 973
BssECI	CCNNGG	2 cut(s)	483, 816
BssMI	GATC	4 cut(s)	199, 315, 382, 958
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	3 cut(s)	222, 292, 902
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	22, 76, 975
BstDEI	CTNAG	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	177, 706, 748
BstFNI	CGCG	2 cut(s)	485, 497
BstKTI	GATC	4 cut(s)	202, 318, 385, 961
BstMAI	GTCTC	4 cut(s)	120, 481, 904, 923
BstMBI	GATC	4 cut(s)	199, 315, 382, 958
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 446, 458, 572
BstNSI	RCATGY	1 cut(s)	890
BstSFI	CTRYAG	1 cut(s)	924
BstUI	CGCG	2 cut(s)	485, 497
BstV1I	GCAGC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	315, 382
BstYI	RGATCY	2 cut(s)	315, 382
BsuRI	GGCC	5 cut(s)	5, 273, 587, 814, 973
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	843
BtsCI	GGATG	3 cut(s)	177, 706, 748
BtsIMutI	CAGTG	2 cut(s)	307, 988
Cac8I	GCNNGC	3 cut(s)	22, 76, 975
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr10I	RCCGGY	2 cut(s)	452, 973
Cfr13I	GGNCC	3 cut(s)	392, 813, 971
Cfr42I	CCGCGG	1 cut(s)	486
Csp6I	GTAC	4 cut(s)	163, 260, 616, 695
CviAII	CATG	3 cut(s)	250, 887, 946
CviQI	GTAC	4 cut(s)	163, 260, 616, 695
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	4 cut(s)	201, 317, 384, 960
DpnII	GATC	4 cut(s)	199, 315, 382, 958
EaeI	YGGCCR	2 cut(s)	3, 585
Eam1104I	CTCTTC	3 cut(s)	222, 292, 902
EarI	CTCTTC	3 cut(s)	222, 292, 902
Ecl136II	GAGCTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	904
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	3 cut(s)	253, 890, 949
FaqI	GGGAC	2 cut(s)	913, 1008
FatI	CATG	3 cut(s)	249, 886, 945
FauI	CCCGC	3 cut(s)	525, 814, 890
Fnu4HI	GCNGC	2 cut(s)	65, 450
FokI	GGATG	3 cut(s)	164, 713, 755
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	65, 450
FspBI	CTAG	2 cut(s)	75, 291
GluI	GCNGC	2 cut(s)	65, 450
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	5 cut(s)	5, 273, 587, 814, 973
HapII	CCGG	3 cut(s)	453, 771, 974
Hin1II	CATG	3 cut(s)	253, 890, 949
HinfI	GANTC	5 cut(s)	308, 499, 509, 901, 996
HpaII	CCGG	3 cut(s)	453, 771, 974
Hpy166II	GTNNAC	2 cut(s)	490, 616
Hpy188I	TCNGA	4 cut(s)	648, 802, 906, 1020
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	2 cut(s)	490, 616
HpyAV	CCTTC	5 cut(s)	42, 147, 263, 541, 886
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4V	TGCA	6 cut(s)	305, 419, 461, 668, 734, 746
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 446, 458, 572
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	253, 890, 949
KroI	GCCGGC	1 cut(s)	973
KroNI	GCCGGC	1 cut(s)	975
KspI	CCGCGG	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	199, 315, 382, 958
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	92, 239
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	4 cut(s)	186, 553, 721, 733
MaeI	CTAG	2 cut(s)	75, 291
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	4 cut(s)	201, 317, 384, 960
MboI	GATC	4 cut(s)	199, 315, 382, 958
MboII	GAAGA	4 cut(s)	209, 279, 526, 919
MflI	RGATCY	2 cut(s)	315, 382
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	2 cut(s)	5, 587
MluCI	AATT	5 cut(s)	349, 468, 735, 874, 1039
MluNI	TGGCCA	2 cut(s)	5, 587
MlyI	GAGTC	2 cut(s)	895, 990
MnlI	CCTC	6 cut(s)	183, 224, 424, 767, 826, 949
Mox20I	TGGCCA	2 cut(s)	5, 587
MroNI	GCCGGC	1 cut(s)	973
MroXI	GAANNNNTTC	1 cut(s)	429
MscI	TGGCCA	2 cut(s)	5, 587
MseI	TTAA	6 cut(s)	276, 471, 609, 882, 951, 1042
Msp20I	TGGCCA	2 cut(s)	5, 587
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	3 cut(s)	453, 771, 974
Mva1269I	GAATGC	1 cut(s)	859
MvnI	CGCG	2 cut(s)	485, 497
MwoI	GCNNNNNNNGC	4 cut(s)	221, 446, 458, 572
NaeI	GCCGGC	1 cut(s)	975
NdeII	GATC	4 cut(s)	199, 315, 382, 958
NgoMIV	GCCGGC	1 cut(s)	973
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	3 cut(s)	253, 890, 949
NlaIV	GGNNCC	2 cut(s)	235, 317
NmeAIII	GCCGAG	1 cut(s)	797
NmuCI	GTSAC	1 cut(s)	838
NspI	RCATGY	1 cut(s)	890
PceI	AGGCCT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	222
PctI	GAATGC	1 cut(s)	859
PdiI	GCCGGC	1 cut(s)	975
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	308, 499, 509
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	66, 451
PleI	GAGTC	2 cut(s)	895, 990
PpsI	GAGTC	2 cut(s)	895, 990
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	235, 317
PspPI	GGNCC	3 cut(s)	392, 813, 971
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	315, 382
RsaI	GTAC	4 cut(s)	164, 261, 617, 696
RsaNI	GTAC	4 cut(s)	163, 260, 616, 695
SacI	GAGCTC	1 cut(s)	249
SacII	CCGCGG	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	6 cut(s)	276, 471, 609, 882, 951, 1042
SatI	GCNGC	2 cut(s)	65, 450
Sau3AI	GATC	4 cut(s)	199, 315, 382, 958
Sau96I	GGNCC	3 cut(s)	392, 813, 971
SchI	GAGTC	2 cut(s)	895, 990
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	22, 139, 249, 338, 394, 711, 916
SfaNI	GCATC	4 cut(s)	186, 553, 721, 733
SfcI	CTRYAG	1 cut(s)	924
Sfr303I	CCGCGG	1 cut(s)	486
SgrBI	CCGCGG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	392
Sse9I	AATT	5 cut(s)	349, 468, 735, 874, 1039
SseBI	AGGCCT	1 cut(s)	273
SsiI	CCGC	9 cut(s)	141, 450, 483, 485, 495, 518, 777, 821, 897
SspI	AATATT	4 cut(s)	100, 241, 430, 1025
SspMI	CTAG	2 cut(s)	75, 291
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	255, 550
TasI	AATT	5 cut(s)	349, 468, 735, 874, 1039
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	3 cut(s)	308, 499, 509
Tru1I	TTAA	6 cut(s)	276, 471, 609, 882, 951, 1042
Tru9I	TTAA	6 cut(s)	276, 471, 609, 882, 951, 1042
TscAI	CASTG	2 cut(s)	307, 995
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	1 cut(s)	768
TspGWI	ACGGA	2 cut(s)	354, 672
TspRI	CASTG	2 cut(s)	307, 995
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	1 cut(s)	890
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	2 cut(s)	75, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.