Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

20434918 .. 20435746

Gene Structure 829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACACTCTCGAAGCTCTTAGAGGCTCCAATATCGAGCTCATGCTTGGGGTCGAACACGAACGCCTTCAGGACATATCTTCTAACCAAGCCAGTGCTGATGATTGAGTCCAAAACAATGTGTCTCGACAGCGGTTCATCCTATAGTCCTCCAAGAATCCTTCCCTCCATCAAAAGATCATTCAAGCAGGATTATCGAGCCTTTCTTGATCCTGTCATTGGTTTCCTTGTAGGAAACCAATCTCCGTTGCTTGTTAATATGTACCCATACTTTAGTTACATTGACAACCGAGAGATTAACCTTCAATATGCTCTTTTCACATATCCATCAGTTCTGGTTCAAGATGGACAACTTGGCTACAAAAACTTGTTTGATGCACTTCTGGATGCACATTACTCCGCTTTAGAGAAGGCCGGAGGCAGTTCTTTGAAAATTGTTGTATCGGAGACGAGTTGGCCTTCCGCTGGTGGTGATGGCGAAGTGACAACAATAGAGAATGTGAGAATCTACAACTCAAATGTGATTAATCATGTCAAGGGTGGTACTCCGAAGAAACCTGAAGGTCCTATAGAAACTTACATATTTGCCATGTTCAATGAGAATGAGAAAACTAGAGCAGAGACTGAGAAGAATTTCGGGCTCTTTTTACCAACCGGAGATCCTGTTTATCCTATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

229

Amino Acids

25.34

Weight (kDa)

5.75

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	57 - 227	1.4e-54	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	132, 399, 462
AclWI	GGATC	2 cut(s)	203, 653
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	2 cut(s)	52, 579
AfaI	GTAC	2 cut(s)	263, 544
AfiI	CCNNNNNNNGG	2 cut(s)	218, 464
AgsI	TTSAA	6 cut(s)	184, 305, 341, 430, 595, 682
AluBI	AGCT	2 cut(s)	16, 39
AluI	AGCT	2 cut(s)	16, 39
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	3 cut(s)	128, 440, 614
AlwI	GGATC	2 cut(s)	203, 653
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	411, 455
ApoI	RAATTY	1 cut(s)	631
AseI	ATTAAT	1 cut(s)	525
Asp700I	GAANNNNTTC	2 cut(s)	65, 632
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	563
BanII	GRGCYC	2 cut(s)	41, 642
Bbv12I	GWGCWC	1 cut(s)	41
BccI	CCATC	4 cut(s)	176, 334, 338, 467
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BcoDI	GTCTC	3 cut(s)	128, 440, 614
BfaI	CTAG	1 cut(s)	612
BfmI	CTRYAG	2 cut(s)	142, 567
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	2 cut(s)	364, 376
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 464
Bse1I	ACTGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	137, 391
BseLI	CCNNNNNNNGG	2 cut(s)	218, 464
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	413, 457
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	414, 654
BslI	CCNNNNNNNGG	2 cut(s)	218, 464
BsmAI	GTCTC	3 cut(s)	128, 440, 614
BsmBI	CGTCTC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	413, 457
Bsp1286I	GDGCHC	2 cut(s)	41, 642
Bsp143I	GATC	3 cut(s)	176, 208, 658
BspACI	CCGC	3 cut(s)	132, 399, 462
BspANI	GGCC	2 cut(s)	413, 457
BspCNI	CTCAG	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	203, 653
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	3 cut(s)	176, 208, 658
BstDEI	CTNAG	2 cut(s)	19, 624
BstF5I	GGATG	2 cut(s)	137, 391
BstKTI	GATC	3 cut(s)	179, 211, 661
BstMAI	GTCTC	3 cut(s)	128, 440, 614
BstMBI	GATC	3 cut(s)	176, 208, 658
BstSFI	CTRYAG	2 cut(s)	142, 567
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	413, 457
BtsCI	GGATG	2 cut(s)	137, 391
BtsIMutI	CAGTG	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	262, 543
CviAII	CATG	3 cut(s)	42, 530, 589
CviJI	RGCY	9 cut(s)	16, 26, 39, 91, 200, 357, 413, 457, 640
CviKI_1	RGCY	9 cut(s)	16, 26, 39, 91, 200, 357, 413, 457, 640
CviQI	GTAC	2 cut(s)	262, 543
DdeI	CTNAG	2 cut(s)	19, 624
DpnI	GATC	3 cut(s)	178, 210, 660
DpnII	GATC	3 cut(s)	176, 208, 658
Ecl136II	GAGCTC	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	41, 642
Eco47I	GGWCC	1 cut(s)	563
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	52, 579
EcoICRI	GAGCTC	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	563
EcoT38I	GRGCYC	2 cut(s)	41, 642
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	3 cut(s)	45, 533, 592
FatI	CATG	3 cut(s)	41, 529, 588
FokI	GGATG	2 cut(s)	124, 398
FriOI	GRGCYC	2 cut(s)	41, 642
FspBI	CTAG	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	413, 457
HapII	CCGG	2 cut(s)	414, 654
Hin1II	CATG	3 cut(s)	45, 533, 592
HinfI	GANTC	3 cut(s)	107, 156, 504
HpaII	CCGG	2 cut(s)	414, 654
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	2 cut(s)	445, 549
Hpy188III	TCNNGA	6 cut(s)	10, 70, 125, 206, 341, 383
HpyAV	CCTTC	6 cut(s)	76, 170, 311, 403, 468, 554
HpyCH4V	TGCA	2 cut(s)	377, 389
HpyF3I	CTNAG	2 cut(s)	19, 624
Hsp92II	CATG	3 cut(s)	45, 533, 592
Kzo9I	GATC	3 cut(s)	176, 208, 658
LmnI	GCTCC	1 cut(s)	31
LweI	GCATC	2 cut(s)	364, 376
MaeI	CTAG	1 cut(s)	612
MaeIII	GTNAC	2 cut(s)	275, 481
MalI	GATC	3 cut(s)	178, 210, 660
MboI	GATC	3 cut(s)	176, 208, 658
MboII	GAAGA	3 cut(s)	71, 562, 640
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	2 cut(s)	41, 642
MluCI	AATT	3 cut(s)	432, 631, 676
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	16, 159, 175, 410
MroXI	GAANNNNTTC	2 cut(s)	65, 632
MseI	TTAA	3 cut(s)	255, 297, 525
MspA1I	CMGCKG	2 cut(s)	132, 464
MspI	CCGG	2 cut(s)	414, 654
NdeII	GATC	3 cut(s)	176, 208, 658
NlaIII	CATG	3 cut(s)	45, 533, 592
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	65, 632
PfeI	GAWTC	2 cut(s)	156, 504
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	563
PshBI	ATTAAT	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	563
PspPPI	RGGWCCY	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	2 cut(s)	263, 544
RsaNI	GTAC	2 cut(s)	262, 543
SacI	GAGCTC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	255, 297, 525
Sau3AI	GATC	3 cut(s)	176, 208, 658
Sau96I	GGNCC	1 cut(s)	563
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	41, 642
SetI	ASST	5 cut(s)	18, 41, 303, 559, 565
SfaNI	GCATC	2 cut(s)	364, 376
SfcI	CTRYAG	2 cut(s)	142, 567
SinI	GGWCC	1 cut(s)	563
Sse9I	AATT	3 cut(s)	432, 631, 676
SsiI	CCGC	3 cut(s)	132, 399, 462
SspMI	CTAG	1 cut(s)	612
SstI	GAGCTC	1 cut(s)	41
TaqI	TCGA	5 cut(s)	11, 35, 53, 126, 196
TasI	AATT	3 cut(s)	432, 631, 676
TfiI	GAWTC	2 cut(s)	156, 504
Tru1I	TTAA	3 cut(s)	255, 297, 525
Tru9I	TTAA	3 cut(s)	255, 297, 525
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	563
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	631
XmnI	GAANNNNTTC	2 cut(s)	65, 632
XspI	CTAG	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.