Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

9561370 .. 9563615

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G121800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCCATGGCCACATCTAAAACAAGCAATACGTCCATTCCCTTCACCACTACTATAATGCTTCTTTTGGGGCTCCTGGTGGCGAACCTTGGTATAACAGGTGTACAATCCGTAGGTGTATGTTATGGAATGCTGGGCAACAATCTACCATCCCACGCAGAAGTTATATCTCTTTACAAATCAAACAACATCAAACAAATGAGAATTTACGATCCAAACCAATCCGCTCTACAAGCTCTTCAAGGCTCCAACATCGAGCTCATGCTTGGTGTCCCAAACCAAGACCTTGAACGCCTCGCAACCAACCCTTCCGAAGCGCAAACATGGGTACAAACAAATGTCTTGAACTTCCGGCAAAGCGTGAGATTCAAATACATTGCGGTTGGAAACGAAGTGAGCCCGGTTTATGGAGACACTACTAGGCTGGCTCAATTTGTCCTCCCCGCAATGAAGAACATATACAACGCAATCAGATCAGCTGGCCTTCAAGACCAAATCAAGGTCTCAACTGCCATAGAGACTGGATTGATAGGCAACTCCTACCCTCCGTCACAAGGCGCTTTTCGCGGCGATGTGAGAGCTTATTTGGACCCAATTATAGGGTTCTTGGTTTATGCCAAATCACCACTACTTGCTAACATCTATACATATTTTAGTTATATTGGAAATCCTAGAGATATTTCTCTTCCTTATGCTTTGTTCACTTCACCGTCAGTTATGGCATGGGATGGTGATAAAGGGTACCAAAACCTGTTTGATGCAATGCTGGACGCTTTGTACTCTGCTGTTGAGAGAGCTGGAGGAGGATCTTTGGAGGTTGTTGTGTCGGAAAGTGGGTGGCCTTCGGCAGGTGCGTTTGGGGCATCAACGGATAATGCGAGGACTTATTACTCGAATTTGATTCGGCATGTGAAAGAGGGTACCCCAAAGAGACCTAAAAGATCCATAGAGACTTACTTGTTTGCCATGTTTGATGAGAATAACAAACTAGGTGAAGAAACAGAGAGACACTTTGGGGTGTTCTTCCCAACTAAAGAGCCAAAGTATAACCTCAATTTCGATACTTCCGCTGGGTATAATACTACAAATACCCTTAACACTGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002215 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009817 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

370

Amino Acids

40.55

Weight (kDa)

5.99

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	839
Acc36I	ACCTGC	1 cut(s)	839
Acc65I	GGTACC	2 cut(s)	741, 920
AccB1I	GGYRCC	2 cut(s)	741, 920
AccBSI	CCGCTC	1 cut(s)	227
AccII	CGCG	1 cut(s)	567
AciI	CCGC	5 cut(s)	225, 380, 444, 567, 1068
AclWI	GGATC	3 cut(s)	206, 814, 936
AcoI	YGGCCR	2 cut(s)	3, 9
AcsI	RAATTY	2 cut(s)	204, 895
AfaI	GTAC	5 cut(s)	105, 330, 743, 779, 922
AfiI	CCNNNNNNNGG	5 cut(s)	407, 499, 554, 599, 848
AflIII	ACRYGT	1 cut(s)	1104
AgsI	TTSAA	5 cut(s)	242, 290, 346, 370, 488
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	5 cut(s)	236, 259, 479, 581, 797
AluI	AGCT	5 cut(s)	236, 259, 479, 581, 797
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	6 cut(s)	405, 508, 512, 925, 944, 1000
AlwI	GGATC	3 cut(s)	206, 814, 936
AoxI	GGCC	4 cut(s)	3, 9, 481, 839
ApoI	RAATTY	2 cut(s)	204, 895
Asp718I	GGTACC	2 cut(s)	741, 920
AspLEI	GCGC	2 cut(s)	319, 560
AspS9I	GGNCC	1 cut(s)	589
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	5 cut(s)	37, 615, 699, 743, 1004
AvaII	GGWCC	1 cut(s)	589
BalI	TGGCCA	2 cut(s)	5, 11
BanI	GGYRCC	2 cut(s)	741, 920
BanII	GRGCYC	3 cut(s)	75, 261, 401
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
Bbv12I	GWGCWC	1 cut(s)	261
BccI	CCATC	2 cut(s)	157, 722
BciT130I	CCWGG	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	6 cut(s)	405, 508, 512, 925, 944, 1000
BfaI	CTAG	3 cut(s)	420, 672, 989
BfoI	RGCGCY	1 cut(s)	561
BfuAI	ACCTGC	1 cut(s)	839
BisI	GCNGC	1 cut(s)	568
BlsI	GCNGC	1 cut(s)	569
Bme1390I	CCNGG	2 cut(s)	77, 401
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	5 cut(s)	74, 247, 591, 743, 922
BmrFI	CCNGG	2 cut(s)	77, 401
BmsI	GCATC	2 cut(s)	748, 872
BpmI	CTGGAG	1 cut(s)	819
BpuMI	CCSGG	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	508, 925
BsaJI	CCNNGG	2 cut(s)	6, 88
Bsc4I	CCNNNNNNNGG	5 cut(s)	407, 499, 554, 599, 848
Bse1I	ACTGG	1 cut(s)	526
Bse3DI	GCAATG	3 cut(s)	375, 453, 768
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	6, 88
BseGI	GGATG	2 cut(s)	149, 733
BseLI	CCNNNNNNNGG	5 cut(s)	407, 499, 554, 599, 848
BseMI	GCAATG	3 cut(s)	375, 453, 768
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	816
BseYI	CCCAGC	2 cut(s)	133, 1070
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	4 cut(s)	5, 11, 483, 841
BshNI	GGYRCC	2 cut(s)	741, 920
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	352, 401
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	5 cut(s)	407, 499, 554, 599, 848
BsmAI	GTCTC	6 cut(s)	405, 508, 512, 925, 944, 1000
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	4 cut(s)	5, 11, 483, 841
Bso31I	GGTCTC	2 cut(s)	508, 925
Bsp1286I	GDGCHC	3 cut(s)	75, 261, 401
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	4 cut(s)	211, 473, 806, 941
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	5 cut(s)	225, 380, 444, 567, 1068
BspANI	GGCC	4 cut(s)	5, 11, 483, 841
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	5 cut(s)	74, 247, 591, 743, 922
BspMI	ACCTGC	1 cut(s)	839
BspPI	GGATC	3 cut(s)	206, 814, 936
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	2 cut(s)	741, 920
BspTNI	GGTCTC	2 cut(s)	508, 925
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	3 cut(s)	375, 453, 768
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	6, 88
BssMI	GATC	4 cut(s)	211, 473, 806, 941
BssT1I	CCWWGG	2 cut(s)	6, 88
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	711
Bst6I	CTCTTC	2 cut(s)	243, 690
BstAUI	TGTACA	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	426, 481
BstDSI	CCRYGG	1 cut(s)	6
BstENI	CCTNNNNNAGG	1 cut(s)	846
BstF5I	GGATG	2 cut(s)	149, 733
BstFNI	CGCG	1 cut(s)	567
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	319, 560
BstKTI	GATC	4 cut(s)	214, 476, 809, 944
BstMAI	GTCTC	6 cut(s)	405, 508, 512, 925, 944, 1000
BstMBI	GATC	4 cut(s)	211, 473, 806, 941
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 564, 860
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	911, 1108
BstSCI	CCNGG	2 cut(s)	75, 399
BstUI	CGCG	1 cut(s)	567
BstX2I	RGATCY	2 cut(s)	806, 941
BstYI	RGATCY	2 cut(s)	806, 941
BsuRI	GGCC	4 cut(s)	5, 11, 483, 841
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	149, 733
BtsIMutI	CAGTG	1 cut(s)	1098
BveI	ACCTGC	1 cut(s)	839
Cac8I	GCNNGC	2 cut(s)	426, 481
CfoI	GCGC	2 cut(s)	319, 560
Cfr13I	GGNCC	1 cut(s)	589
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	5 cut(s)	104, 329, 742, 778, 921
CviAII	CATG	7 cut(s)	7, 262, 324, 723, 908, 967, 1105
CviQI	GTAC	5 cut(s)	104, 329, 742, 778, 921
DpnI	GATC	4 cut(s)	213, 475, 808, 943
DpnII	GATC	4 cut(s)	211, 473, 806, 941
EaeI	YGGCCR	2 cut(s)	3, 9
Eam1104I	CTCTTC	2 cut(s)	243, 690
EarI	CTCTTC	2 cut(s)	243, 690
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	6, 88
Eco24I	GRGCYC	3 cut(s)	75, 261, 401
Eco31I	GGTCTC	2 cut(s)	508, 925
Eco47I	GGWCC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	6, 88
EcoT38I	GRGCYC	3 cut(s)	75, 261, 401
ErhI	CCWWGG	2 cut(s)	6, 88
FaeI	CATG	7 cut(s)	10, 265, 327, 726, 911, 970, 1108
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	7 cut(s)	6, 261, 323, 722, 907, 966, 1104
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	568
FokI	GGATG	2 cut(s)	136, 740
FriOI	GRGCYC	3 cut(s)	75, 261, 401
Fsp4HI	GCNGC	1 cut(s)	568
FspBI	CTAG	3 cut(s)	420, 672, 989
GlaI	GCGC	2 cut(s)	318, 559
GluI	GCNGC	1 cut(s)	568
GsaI	CCCAGC	2 cut(s)	137, 1074
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	4 cut(s)	5, 11, 483, 841
HapII	CCGG	2 cut(s)	352, 401
HgaI	GACGC	1 cut(s)	779
HhaI	GCGC	2 cut(s)	319, 560
Hin1II	CATG	7 cut(s)	10, 265, 327, 726, 911, 970, 1108
Hin6I	GCGC	2 cut(s)	317, 558
HinP1I	GCGC	2 cut(s)	317, 558
HinfI	GANTC	2 cut(s)	366, 901
HpaII	CCGG	2 cut(s)	352, 401
HphI	GGTGA	5 cut(s)	37, 615, 699, 743, 1004
Hpy166II	GTNNAC	2 cut(s)	104, 702
Hpy188I	TCNGA	3 cut(s)	313, 473, 829
Hpy188III	TCNNGA	2 cut(s)	343, 488
Hpy8I	GTNNAC	2 cut(s)	104, 702
HpyAV	CCTTC	4 cut(s)	52, 318, 494, 852
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 564, 860
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	7 cut(s)	10, 265, 327, 726, 911, 970, 1108
HspAI	GCGC	2 cut(s)	317, 558
KpnI	GGTACC	2 cut(s)	745, 924
Kzo9I	GATC	4 cut(s)	211, 473, 806, 941
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	2 cut(s)	78, 251
LweI	GCATC	2 cut(s)	748, 872
MaeI	CTAG	3 cut(s)	420, 672, 989
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	4 cut(s)	213, 475, 808, 943
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	4 cut(s)	211, 473, 806, 941
MboII	GAAGA	5 cut(s)	230, 463, 677, 1007, 1015
MflI	RGATCY	2 cut(s)	806, 941
MhlI	GDGCHC	3 cut(s)	75, 261, 401
MlsI	TGGCCA	2 cut(s)	5, 11
MluCI	AATT	5 cut(s)	204, 431, 594, 895, 1054
MluNI	TGGCCA	2 cut(s)	5, 11
MmeI	TCCRAC	3 cut(s)	273, 364, 807
MnlI	CCTC	9 cut(s)	305, 449, 555, 794, 797, 808, 873, 910, 1061
Mox20I	TGGCCA	2 cut(s)	5, 11
MscI	TGGCCA	2 cut(s)	5, 11
MseI	TTAA	1 cut(s)	1095
MslI	CAYNNNNRTG	1 cut(s)	1103
Msp20I	TGGCCA	2 cut(s)	5, 11
MspA1I	CMGCKG	2 cut(s)	479, 1070
MspI	CCGG	2 cut(s)	352, 401
MspR9I	CCNGG	2 cut(s)	77, 401
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	3 cut(s)	233, 564, 860
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	211, 473, 806, 941
NlaIII	CATG	7 cut(s)	10, 265, 327, 726, 911, 970, 1108
NlaIV	GGNNCC	5 cut(s)	74, 247, 591, 743, 922
NmuCI	GTSAC	1 cut(s)	549
NspI	RCATGY	2 cut(s)	911, 1108
PaqCI	CACCTGC	1 cut(s)	839
PciI	ACATGT	1 cut(s)	1104
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	2 cut(s)	851, 875
PctI	GAATGC	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	366, 901
PkrI	GCNGC	1 cut(s)	569
PscI	ACATGT	1 cut(s)	1104
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	2 cut(s)	133, 1070
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	5 cut(s)	74, 247, 591, 743, 922
PspPI	GGNCC	1 cut(s)	589
PsuI	RGATCY	2 cut(s)	806, 941
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	5 cut(s)	105, 330, 743, 779, 922
RsaNI	GTAC	5 cut(s)	104, 329, 742, 778, 921
RseI	CAYNNNNRTG	1 cut(s)	1103
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	1095
SatI	GCNGC	1 cut(s)	568
Sau3AI	GATC	4 cut(s)	211, 473, 806, 941
Sau96I	GGNCC	1 cut(s)	589
ScrFI	CCNGG	2 cut(s)	77, 401
SduI	GDGCHC	3 cut(s)	75, 261, 401
SfaNI	GCATC	2 cut(s)	748, 872
SinI	GGWCC	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	1103
Sse9I	AATT	5 cut(s)	204, 431, 594, 895, 1054
SsiI	CCGC	5 cut(s)	225, 380, 444, 567, 1068
SspMI	CTAG	3 cut(s)	420, 672, 989
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	75, 399
StyI	CCWWGG	2 cut(s)	6, 88
TaaI	ACNGT	1 cut(s)	711
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	3 cut(s)	255, 893, 1059
TasI	AATT	5 cut(s)	204, 431, 594, 895, 1054
TatI	WGTACW	2 cut(s)	103, 777
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	2 cut(s)	366, 901
Tru1I	TTAA	1 cut(s)	1095
Tru9I	TTAA	1 cut(s)	1095
TscAI	CASTG	1 cut(s)	1105
TseFI	GTSAC	1 cut(s)	549
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	3 cut(s)	100, 537, 884
TspRI	CASTG	1 cut(s)	1105
VpaK11BI	GGWCC	1 cut(s)	589
XagI	CCTNNNNNAGG	1 cut(s)	846
XapI	RAATTY	2 cut(s)	204, 895
XceI	RCATGY	2 cut(s)	911, 1108
XspI	CTAG	3 cut(s)	420, 672, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.