Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

65199172 .. 65200169

Gene Structure 998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTAAGTCCTATGTAGTTGCCAAAGTTCCTTCTGTAGTTTCCAAGTTACTACTATTGGGTATCCTCATGGCTACCTTTACCACAACAGGTGCCCAGATTGGTGGTTGTCATGGAAATGTCGAAAATGAACGCCTTCAGGACATTTCTTCTAACCAAGCCAGTGCCGATGATTGGGTCCAAAAAAATGTTGTAACCTATGGAAACGTCAATTTCAAACACATTGCGGTTGGAAATGAAATAGATGCTACAGGTCCTTTAGCACCATATGTTGGGCCTGCCATGGAAAAAATTCAAAATGCAATTTCGAAAGCTGGTCTTGCTAATAAAATTAAAGTCTTCTCGGCAGTTCATCCTATAATCCTCCAAGAATCCTCCGCTCCATCAATAGGACCATTCAGGCCGAATTACCGACCCTTTCTTGATCCTATCATCAGTTTCCTTGTGGGAAAGCAGTCTCCGTTGCTTCATAATACTTACCCATACTTTAGTTACATTGACAACAGAGCAATTAACCTTCAATATGCTCTTCTAGTTTATCACATGGTATGGACAACTGGCTTCAAAAACTTGTTTGAGGCTTTAGAGAAGGCAGGCAGCAGTTCTTTGAAAATTGTTGCATCAGATATAGGTTGGCCTGATCCCTCCATTGGTGGTGATGGGCAAGTGGCATGGCCACAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

229

Amino Acids

24.7

Weight (kDa)

7.82

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	40 - 214	6.2e-38	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	380
AciI	CCGC	2 cut(s)	227, 378
AclWI	GGATC	2 cut(s)	419, 635
AcoI	YGGCCR	1 cut(s)	674
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	122
AfiI	CCNNNNNNNGG	4 cut(s)	174, 272, 389, 650
AgsI	TTSAA	5 cut(s)	217, 296, 521, 565, 610
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	419, 635
AoxI	GGCC	4 cut(s)	275, 401, 635, 674
ApeKI	GCWGC	1 cut(s)	597
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	2 cut(s)	135, 291
AspS9I	GGNCC	4 cut(s)	178, 254, 275, 392
AsuHPI	GGTGA	1 cut(s)	668
AsuII	TTCGAA	1 cut(s)	308
AvaII	GGWCC	3 cut(s)	178, 254, 392
BaeGI	GKGCMC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	2 cut(s)	391, 653
BciVI	GTATCC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	2 cut(s)	36, 249
BfuI	GTATCC	1 cut(s)	74
BisI	GCNGC	1 cut(s)	598
BlsI	GCNGC	1 cut(s)	599
Bme18I	GGWCC	3 cut(s)	178, 254, 392
BmgT120I	GGNCC	4 cut(s)	178, 254, 275, 392
BmiI	GGNNCC	2 cut(s)	94, 179
BmsI	GCATC	2 cut(s)	235, 629
BpiI	GAAGAC	1 cut(s)	331
Bpu14I	TTCGAA	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 272, 389, 650
Bse1I	ACTGG	2 cut(s)	162, 562
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	4 cut(s)	174, 272, 389, 650
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	162, 562
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	609
BshFI	GGCC	4 cut(s)	277, 403, 637, 676
BshNI	GGYRCC	1 cut(s)	92
BslI	CCNNNNNNNGG	4 cut(s)	174, 272, 389, 650
BsmAI	GTCTC	1 cut(s)	462
BsnI	GGCC	4 cut(s)	277, 403, 637, 676
Bsp119I	TTCGAA	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	424, 640
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	2 cut(s)	227, 378
BspANI	GGCC	4 cut(s)	277, 403, 637, 676
BspLI	GGNNCC	2 cut(s)	94, 179
BspPI	GGATC	2 cut(s)	419, 635
BspQI	GCTCTTC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	162, 562
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	424, 640
BssT1I	CCWWGG	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	279, 595
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	2 cut(s)	427, 643
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	2 cut(s)	424, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstSFI	CTRYAG	2 cut(s)	36, 249
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	609
BstV2I	GAAGAC	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	74
BsuRI	GGCC	4 cut(s)	277, 403, 637, 676
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	279, 595
Cfr13I	GGNCC	4 cut(s)	178, 254, 275, 392
CviAII	CATG	5 cut(s)	70, 113, 283, 544, 672
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	426, 642
DpnII	GATC	2 cut(s)	424, 640
EaeI	YGGCCR	1 cut(s)	674
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	3 cut(s)	178, 254, 392
Eco57I	CTGAAG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	73, 116, 286, 547, 675
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	5 cut(s)	69, 112, 282, 543, 671
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	598
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	598
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	1 cut(s)	598
HaeIII	GGCC	4 cut(s)	277, 403, 637, 676
Hin1II	CATG	5 cut(s)	73, 116, 286, 547, 675
HinfI	GANTC	1 cut(s)	371
HphI	GGTGA	1 cut(s)	668
Hpy188I	TCNGA	1 cut(s)	625
Hpy188III	TCNNGA	2 cut(s)	140, 422
HpyAV	CCTTC	4 cut(s)	42, 146, 527, 583
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	302, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	73, 116, 286, 547, 675
Kzo9I	GATC	2 cut(s)	424, 640
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	2 cut(s)	235, 629
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	3 cut(s)	48, 193, 491
MalI	GATC	2 cut(s)	426, 642
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	2 cut(s)	424, 640
MboII	GAAGA	3 cut(s)	141, 331, 521
MhlI	GDGCHC	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	676
MluCI	AATT	7 cut(s)	211, 291, 303, 330, 406, 510, 612
MluNI	TGGCCA	1 cut(s)	676
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	5 cut(s)	77, 374, 385, 571, 655
Mox20I	TGGCCA	1 cut(s)	676
MroXI	GAANNNNTTC	2 cut(s)	135, 291
MscI	TGGCCA	1 cut(s)	676
MseI	TTAA	2 cut(s)	333, 513
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	676
MwoI	GCNNNNNNNGC	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	2 cut(s)	424, 640
NlaIII	CATG	5 cut(s)	73, 116, 286, 547, 675
NlaIV	GGNNCC	2 cut(s)	94, 179
NmeAIII	GCCGAG	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	308
PciSI	GCTCTTC	1 cut(s)	534
PdmI	GAANNNNTTC	2 cut(s)	135, 291
PfeI	GAWTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	94, 179
PspPI	GGNCC	4 cut(s)	178, 254, 275, 392
PspPPI	RGGWCCY	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	333, 513
SatI	GCNGC	1 cut(s)	598
Sau3AI	GATC	2 cut(s)	424, 640
Sau96I	GGNCC	4 cut(s)	178, 254, 275, 392
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	8 cut(s)	80, 94, 200, 210, 256, 316, 519, 634
SfaNI	GCATC	2 cut(s)	235, 629
SfcI	CTRYAG	2 cut(s)	36, 249
SfuI	TTCGAA	1 cut(s)	308
SinI	GGWCC	3 cut(s)	178, 254, 392
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	7 cut(s)	211, 291, 303, 330, 406, 510, 612
SsiI	CCGC	2 cut(s)	227, 378
SspMI	CTAG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	123, 308
TasI	AATT	7 cut(s)	211, 291, 303, 330, 406, 510, 612
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	333, 513
Tru9I	TTAA	2 cut(s)	333, 513
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	597
TspDTI	ATGAA	4 cut(s)	144, 252, 341, 458
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	3 cut(s)	178, 254, 392
XapI	RAATTY	1 cut(s)	291
XmnI	GAANNNNTTC	2 cut(s)	135, 291
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.